View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7084_low_16 (Length: 218)

Name: NF7084_low_16
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7084_low_16
NF7084_low_16
[»] chr2 (18 HSPs)
chr2 (1-218)||(14566349-14566566)
chr2 (1-153)||(22885159-22885311)
chr2 (1-143)||(29487034-29487175)
chr2 (6-141)||(27739883-27740018)
chr2 (1-153)||(4471826-4471978)
chr2 (1-98)||(2062810-2062907)
chr2 (3-153)||(18680969-18681120)
chr2 (1-141)||(15126448-15126582)
chr2 (106-153)||(33788658-33788705)
chr2 (1-153)||(25504935-25505088)
chr2 (1-141)||(41086826-41086965)
chr2 (2-36)||(7874195-7874229)
chr2 (56-153)||(31902440-31902538)
chr2 (1-74)||(3745262-3745335)
chr2 (1-49)||(15817519-15817567)
chr2 (77-141)||(16959961-16960025)
chr2 (1-33)||(37770788-37770820)
chr2 (109-153)||(39338891-39338935)
[»] chr8 (7 HSPs)
chr8 (1-153)||(15906588-15906741)
chr8 (52-153)||(30236154-30236256)
chr8 (1-137)||(17720747-17720883)
chr8 (2-141)||(35062360-35062500)
chr8 (166-217)||(427947-427998)
chr8 (1-71)||(10248662-10248732)
chr8 (2-153)||(10552172-10552323)
[»] chr1 (5 HSPs)
chr1 (2-138)||(50589248-50589383)
chr1 (1-153)||(38544764-38544916)
chr1 (62-141)||(19598599-19598679)
chr1 (1-153)||(9313315-9313468)
chr1 (181-217)||(26088640-26088676)
[»] chr4 (11 HSPs)
chr4 (1-141)||(12296077-12296218)
chr4 (1-153)||(46698811-46698964)
chr4 (2-153)||(25753075-25753227)
chr4 (1-153)||(22811186-22811338)
chr4 (90-153)||(28966859-28966922)
chr4 (1-153)||(53823447-53823600)
chr4 (1-49)||(19815355-19815403)
chr4 (1-142)||(21987963-21988098)
chr4 (77-141)||(38929806-38929870)
chr4 (3-150)||(39421042-39421190)
chr4 (3-36)||(2825688-2825721)
[»] chr7 (16 HSPs)
chr7 (2-152)||(11379154-11379305)
chr7 (1-153)||(13311740-13311894)
chr7 (2-135)||(44755530-44755663)
chr7 (2-136)||(1320697-1320832)
chr7 (1-141)||(8745055-8745196)
chr7 (98-150)||(23983195-23983247)
chr7 (2-153)||(46133304-46133456)
chr7 (1-138)||(9107065-9107203)
chr7 (1-150)||(42533281-42533431)
chr7 (41-141)||(9428143-9428243)
chr7 (1-141)||(16954555-16954696)
chr7 (103-156)||(48058677-48058730)
chr7 (58-152)||(38485515-38485610)
chr7 (80-150)||(24324827-24324897)
chr7 (93-153)||(12480881-12480941)
chr7 (109-153)||(38306272-38306316)
[»] chr5 (11 HSPs)
chr5 (1-153)||(7195265-7195417)
chr5 (1-153)||(7392057-7392210)
chr5 (57-153)||(23426302-23426399)
chr5 (1-141)||(24072304-24072445)
chr5 (2-153)||(31721580-31721732)
chr5 (1-46)||(8297370-8297415)
chr5 (62-141)||(27713032-27713112)
chr5 (1-153)||(8730819-8730972)
chr5 (1-141)||(39184225-39184366)
chr5 (12-141)||(33258920-33259050)
chr5 (108-153)||(22675350-22675395)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-153)||(1043-1195)
[»] chr6 (6 HSPs)
chr6 (1-153)||(33968639-33968792)
chr6 (1-153)||(32935365-32935518)
chr6 (1-144)||(3880618-3880762)
chr6 (93-153)||(26534745-26534805)
chr6 (109-154)||(34090374-34090419)
chr6 (1-141)||(20701841-20701982)
[»] chr3 (11 HSPs)
chr3 (1-153)||(5556472-5556625)
chr3 (1-153)||(37123284-37123437)
chr3 (62-153)||(47945668-47945761)
chr3 (164-217)||(7826078-7826131)
chr3 (164-217)||(7828401-7828454)
chr3 (2-47)||(23328482-23328527)
chr3 (2-141)||(30935428-30935569)
chr3 (2-74)||(27398861-27398933)
chr3 (1-71)||(25647586-25647656)
chr3 (168-217)||(7823226-7823275)
chr3 (2-74)||(823541-823613)
[»] scaffold0050 (1 HSPs)
scaffold0050 (2-153)||(36610-36762)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-71)||(58029-58099)
[»] scaffold0620 (1 HSPs)
scaffold0620 (109-154)||(3841-3886)
[»] scaffold0200 (1 HSPs)
scaffold0200 (2-141)||(19285-19426)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14566349 - 14566566
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  14566349 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttgacgagctacggtgtttctctggtggactggggttaggggtgcccgtctggttt 14566448  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtttttcactgcatgagttaactcatgtaggggcattttcggaagtttga 200  Q
    |||| ||||||||| |||| ||||||||| |||||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||     
T  14566449 ggtcctgaagtctgatggggcgatcgattctgattcgagattaggagtaagtttttcgctgcatgagttaactcacgtaggggcattttcggaagtttgg 14566548  T
Q  201 ttaggaatgagcaaaacg 218  Q
    ||   |||||||||||||    
T  14566549 ttgtaaatgagcaaaacg 14566566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 22885311 - 22885159
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||||||||| |||||||||| |  |||||||||||| ||| ||||||    
T  22885311 cttttgcttcgagatcgggagttggtgtctagctgcttccttgtttggcgggctacggtgttgctctggtggattgggggttaggggtgcccg-ctggtt 22885213  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    || || |||||||||||||| |||||  |||||||||||||| ||| |||||||    
T  22885212 tgatcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 22885159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29487034 - 29487175
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||  |||||||||||| ||||||||||    
T  29487034 cttttgcttcgagatcgggagttggtgtctagctgctttcttgtctggcgggct-cggtgtttctctggtggactgggggttaggggtgcccgtctggtt 29487132  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattg 143  Q
    || || ||||||||||| || | |||| ||||||||||||||||    
T  29487133 tgatcttgaagtctggt-ggccaatcgcttttgattcgagattg 29487175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 27739883 - 27740018
Alignment:
Q  6 gcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactaggg-ttaggggtgtccgtctggtttggtc 104  Q
    |||||||||||| ||||| |||||||||||||||  |||||||||  ||||||| ||||||||||||||| ||| ||||||||| || ||||| ||||||    
T  27739883 gcttcgagatcgggagttagtgtctagctgctttcatgtttggcggactacggt-tttctctggtggactgggggttaggggtgcccatctggattggtc 27739981  T
Q  105 atgaagtctggtgggtcgatcgattttgattcgagat 141  Q
     |||||||||||||| |||||| ||||||||| ||||    
T  27739982 ctgaagtctggtgggccgatcgcttttgattcaagat 27740018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4471826 - 4471978
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggttt 100  Q
    |||||||||| |||||| ||||||| ||||| || |||| |||||||||   |||| |||||||||||||||||  ||| || ||| | |||||||||||    
T  4471826 cttttgcttcaagatcgggagttggcgtctatctactttattgtttggctgactacagtgtttctctggtggaccgggggtaagggggcccgtctggttt 4471925  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| || ||||||||||| ||||||  ||||||||||||| ||| |||||||    
T  4471926 ggtcctggagtctggtgggccgatcgcctttgattcgagatcgggagtcagtt 4471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2062810 - 2062907
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggt 98  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||||  |||||| |  |||||||||||||  |||| ||||||| |||||||||    
T  2062810 cttttgcttcgagatcgggagttggtgtctagctgcattcttgtttggctggctacgatcattctctggtggaccggggtaaggggtgcccgtctggt 2062907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 18680969 - 18681120
Alignment:
Q  3 tttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtttg 101  Q
    ||||||||||||||| ||||||| ||||||| || || ||||||||    ||||||||||||||| ||||| |  |||| |||  || || |||| ||||    
T  18680969 tttgcttcgagatcgggagttggcgtctagcggcgttattgtttggttgactacggtgtttctctagtggaccgggggtaaggactgcccttctgatttg 18681068  T
Q  102 gtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    || ||||||| ||||||| |||| |  ||||||||||||| ||| |||||||    
T  18681069 gttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagtt 18681120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 15126582 - 15126448
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||| |||||||||| || ||||||||         || ||||||||||||| |  |||| ||||||  |||||| |||    
T  15126582 cttttgcttcgagatcgggagttggcgtctagctgcattcttgtttgg-------ttgtctttctctggtggaccgggggtaaggggttcccgtctcgtt 15126490  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
     |||| |||||||||||||| |||||  ||||||||||||||    
T  15126489 gggtcctgaagtctggtgggccgatcatttttgattcgagat 15126448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 33788705 - 33788658
Alignment:
Q  106 tgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||||||||||||| |||||| |||||||||||||||||| |||||||    
T  33788705 tgaagtctggtgggccgatcgcttttgattcgagattgggagtcagtt 33788658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 25505088 - 25504935
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||   ||||||||||||||| || | |  ||| ||  ||||||||||| || ||||||||| ||| | ||||||| || | || ||    
T  25505088 cttttgcttcgagatcagaagttggtgtctagctactatctgattttgctggctacggtgttcctatggtggactgaggataaggggtgcccttatgatt 25504989  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| || ||||||||||  | |||| |||| ||||||||| ||| |||||||    
T  25504988 tggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagtt 25504935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41086965 - 41086826
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggttt 100  Q
    ||||||||| ||||||| || | |||||| |||| |  |||||||||||| | |  |||||| |||||||| || |||| |  ||||| || |||| |||    
T  41086965 cttttgctttgagatcgggaatcggtgtccagctacaattttgtttggcgtgatttggtgtt-ctctggtgtaccaggggtgagggtgcccttctgattt 41086867  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||||  ||||||||||||| |||  ||||||||||||||    
T  41086866 ggtcatatagtctggtgggtcaatcacttttgattcgagat 41086826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 7874195 - 7874229
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgc 36  Q
    |||||||||||||||| ||||||||||||||||||    
T  7874195 ttttgcttcgagatcgggagttggtgtctagctgc 7874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 31902538 - 31902440
Alignment:
Q  56 cggtgtttctctggtggactaggg-ttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| ||||||||||||||  ||| |||||||||||| |||  |||| |  |||||||||||||| | |||| |||| ||||||||| ||| |||||||    
T  31902538 cggtatttctctggtggaccgggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagtt 31902440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3745262 - 3745335
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggac 74  Q
    ||||| ||| ||||||| ||||||| ||||||||||  | | |||||||  |||||| ||||||||||||||||    
T  3745262 cttttactttgagatcgggagttggcgtctagctgcagtctcgtttggcaggctacgctgtttctctggtggac 3745335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15817567 - 15817519
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggc 49  Q
    ||||||||||||||||||||||| |||||||| |||   ||||||||||    
T  15817567 cttttgcttcgagatcgagagttagtgtctagttgcaagtttgtttggc 15817519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 16959961 - 16960025
Alignment:
Q  77 gggttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    |||| ||||||| |||| ||||  |||| | |||||||||||| |||||| ||||||||||||||    
T  16959961 gggtaaggggtgcccgtttggtagggtcctaaagtctggtgggccgatcgcttttgattcgagat 16960025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37770820 - 37770788
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  37770820 cttttgcttcgagatcgggagttggtgtctagc 37770788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 39338935 - 39338891
Alignment:
Q  109 agtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||||||||| |||||| |||||||||||||| ||| |||||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 39338891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15906588 - 15906741
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    |||||| |||||||||| ||||||||||||| ||||||| ||||  |||| |||| |||||||||| ||||||||  |||||| ||||| |||| |||||    
T  15906588 cttttgtttcgagatcgggagttggtgtctaactgctttcttgtccggcgggctatggtgtttctcgggtggactgggggttaagggtgcccgtttggtt 15906687  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| |||||||||||||| |||||   ||||||||||||| ||| |||||||    
T  15906688 tggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagtt 15906741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 30236256 - 30236154
Alignment:
Q  52 gctacggtgtttctctggtggactagggtta-ggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtca 150  Q
    |||||||||||||||||||||||  ||| || |||||| || |||| ||||||  |||||||||||||| |||||| |||||||||||||| ||| ||||    
T  30236256 gctacggtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtca 30236157  T
Q  151 gtt 153  Q
    |||    
T  30236156 gtt 30236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17720883 - 17720747
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggacta-gggttaggggtgtccgtctggtt 99  Q
    ||||||||| ||||||||||||||| || ||||||| || |||||||||  ||| | ||||| ||||||||||| | |||| ||||||| | ||||||||    
T  17720883 cttttgctttgagatcgagagttggcgtatagctgcattcttgtttggctggct-ccgtgttcctctggtggaccaggggtaaggggtgcctgtctggtt 17720785  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcg 137  Q
    ||||| | |||| |||||||  ||||| ||||||||||    
T  17720784 tggtcctaaagtatggtgggctgatcgcttttgattcg 17720747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 35062360 - 35062500
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggttt 100  Q
    |||||||||||||||| ||||||| ||||||  || || ||||||||   ||||| ||||||| |||   || | ||||| ||||||| |  |||| |||    
T  35062360 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttcactgaaagatcgagggtaaggggtgcctctctgattt 35062459  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    |||  |||||||||||||| |||||||||||||||||||||    
T  35062460 ggttctgaagtctggtgggccgatcgattttgattcgagat 35062500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 427998 - 427947
Alignment:
Q  166 agttaactcatgtaggggcattttcggaagtttgattaggaatgagcaaaac 217  Q
    |||||||||| | ||||||||||||||||||||| || ||||||||||||||    
T  427998 agttaactcacgcaggggcattttcggaagtttggttgggaatgagcaaaac 427947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10248732 - 10248662
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtg 71  Q
    ||||||||||||||||| |||| |||||||||||||  |||||||||||  | |  |||||||||||||||    
T  10248732 cttttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttgatttggtgtttctctggtg 10248662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 10552172 - 10552323
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggtta-ggggtgtccgtctggttt 100  Q
    |||||||||||||||| ||||||| | |||||  | || |||||||     |||| ||||||||||||| ||| ||||  | |||||| || |||| |||    
T  10552172 ttttgcttcgagatcgggagttggcgcctagcgacattattgtttgattgactacagtgtttctctggtagaccaggggcaaggggtgccc-tctgattt 10552270  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||  |||||||||||||| |||||| ||||||||| |||| ||| |||||||    
T  10552271 ggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagtt 10552323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 50589383 - 50589248
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggttt 100  Q
    |||||||||||||||| || |||| ||||||||||||| |||||||||  ||||||  ||||||||||||||||  |||| ||||||| ||||||||||     
T  50589383 ttttgcttcgagatcgggacttggcgtctagctgctttcttgtttggctggctacg--gtttctctggtggactgggggtaaggggtgcccgtctggttg 50589286  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcga 138  Q
    |||| ||||||| ||||||  ||||| |||||||||||    
T  50589285 ggtcctgaagtccggtgggctgatcgcttttgattcga 50589248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 38544916 - 38544764
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggtt-aggggtgtccgtctggtt 99  Q
    ||||||||||||||| | ||||||||||||||||||  | |||||||      |  ||||||||||||||||||| ||  | ||||||  || |||| ||    
T  38544916 cttttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatgaggggtc-ccttctgatt 38544818  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||| |||||||    
T  38544817 tggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 38544764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 19598599 - 19598679
Alignment:
Q  62 ttctctggtggact-agggttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    |||||||||||||  ||||| ||||||| |||||||||| |||| |||||||||||||| |||||| ||||||||||||||    
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagat 19598679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9313468 - 9313315
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||| || | |  ||||||||||| ||| | |  | || ||||||| || |||| ||    
T  9313468 cttttgcttcgagatcgggagttggtgtctagctgcaattttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatt 9313369  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| | |||||| |||||  ||||  |||||||||||||| ||| |||||||    
T  9313368 tggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagtt 9313315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 26088676 - 26088640
Alignment:
Q  181 gggcattttcggaagtttgattaggaatgagcaaaac 217  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26088676 gggcattttcggaagtttgattgggaatgagcaaaac 26088640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12296077 - 12296218
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||| |||||||||| || || |||||| |||||||||| | |||| ||||| |  |||| ||||||| || |||||||    
T  12296077 cttttgcttcgagatcgggagttggcgtctagctgcattcttatttggctagctacggtgatcctctagtggaccgggggtaaggggtgcccctctggtt 12296176  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||| |||||||||||| | ||| || ||||||||||||||    
T  12296177 tggtcctgaagtctggtgtgccgagcgcttttgattcgagat 12296218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 46698964 - 46698811
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||||||||||||||  | ||||||||  |||||| | |||||| ||||||| | |||||  |||||| || |||| ||    
T  46698964 cttttgcttcgagatcgggagttggtgtctagctgcagtcttgtttggtaagctacagagtttctttggtggaccgagggtgtggggtgcccttctgatt 46698865  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| || ||||||||||| |||| | |||||||||||||| ||| |||||||    
T  46698864 tggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagtt 46698811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 25753075 - 25753227
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactag-ggttaggggtgtccgtctggttt 100  Q
    |||||||||||||||| |||| |||||||||||||  | |||||||||| | |  ||||||||||||||| ||  | ||| ||| ||| ||||||  |||    
T  25753075 ttttgcttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtgatgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttattt 25753174  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| | |||||||||||| |||||  |||||||||||||| ||| |||||||    
T  25753175 ggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagtt 25753227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 22811338 - 22811186
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggttt 100  Q
    |||||||||||||||||  | ||||||||||| |||  |||||||||| | | |  ||||||||||||||| |   |||| ||| ||| || |||| |||    
T  22811338 cttttgcttcgagatcggaacttggtgtctagttgcaattttgtttggtgtgatttggtgtttctctggtgtatcggggtgaggagtgcccttctgattt 22811239  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| | |||||||||||| |||||  |||| ||||||||| ||| |||||||    
T  22811238 ggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagtt 22811186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 28966859 - 28966922
Alignment:
Q  90 ccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||||| ||| |||| ||||||||||| || |||||| |||||||||||||||||| |||||||    
T  28966859 ccgtctagttgggtcctgaagtctggtagggcgatcgtttttgattcgagattgggagtcagtt 28966922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 53823600 - 53823447
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactag-ggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| |||| |||||||| ||||  | ||| |||||  |    ||||||||||||||| ||  | ||| ||||||| || |||| ||    
T  53823600 cttttgcttcgagatcgggagtcggtgtctaactgcaatcttgcttggcttgacttggtgtttctctggtgtaccggaggtgaggggtgcccttctgatt 53823501  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||||| |||||||||||  | |||  |||||||||||||| ||| |||||||    
T  53823500 tggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagtt 53823447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19815403 - 19815355
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggc 49  Q
    |||||||||||||||||||||| |||||||||||||  | |||||||||    
T  19815403 cttttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggc 19815355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21988098 - 21987963
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggtta-ggggtgtccgtctggtt 99  Q
    |||||| |||||||||  |||||||||||||||||| || |||||||||  ||        |||||||||||||  ||| || |||||| ||||||||||    
T  21988098 cttttgtttcgagatcaggagttggtgtctagctgcattcttgtttggctggca-------ttctctggtggaccgggggtaaggggtgcccgtctggtt 21988006  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagatt 142  Q
     |||| ||||||||| ||   |||||| |||||||||||||||    
T  21988005 gggtcctgaagtctgatgaaccgatcgcttttgattcgagatt 21987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 38929806 - 38929870
Alignment:
Q  77 gggttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    |||| ||||||| |||||||||| |||| ||||||||| |||| |||||  ||||||||||||||    
T  38929806 gggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagat 38929870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 39421190 - 39421042
Alignment:
Q  3 tttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtttg 101  Q
    ||||||||||||||| || | |||||||||||||  | |||||||||| | |  |||||||||||  || ||| ||||| ||||||| || |||| | ||    
T  39421190 tttgcttcgagatcgggaatcggtgtctagctgcaatcttgtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatg 39421091  T
Q  102 gtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtca 150  Q
    ||| |  || |||||||| |||||  |||||||||||||| ||| ||||    
T  39421090 gtcttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 2825688 - 2825721
Alignment:
Q  3 tttgcttcgagatcgagagttggtgtctagctgc 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  2825688 tttgcttcgagattgagagttggtgtctagctgc 2825721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 11379305 - 11379154
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggttt 100  Q
    ||||| ||| |||||| |||||||||||||||| |  | |||||||||   ||||||||||||||||||||||  |||||| |||||| || |||  |||    
T  11379305 ttttgattcaagatcgggagttggtgtctagctacaatcttgtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttctaattt 11379206  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagt 152  Q
    ||||||| ||||||||| | |||||| |||||||||||||| ||| ||||||    
T  11379205 ggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagt 11379154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 13311740 - 13311894
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgag-ctacggtgtttctctggtggactagggtta-ggggtgtccgtctggt 98  Q
    ||||| ||||||||||| ||||||||||||| |||| || || ||| |   | || || ||||||||||||||||  ||| || |||||| |||||||||    
T  13311740 cttttccttcgagatcgggagttggtgtctaactgcattcttattttgactgacttcgttgtttctctggtggaccggggataaggggtgcccgtctggt 13311839  T
Q  99 ttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||||||| ||||||||||| |||||  |||||||||||||| ||| |||||||    
T  13311840 ttggtcatgtagtctggtgggccgatcacttttgattcgagatcgggagtcagtt 13311894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 44755530 - 44755663
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggtttg 101  Q
    |||||||| ||| ||| |||| |||||||||||||| ||||||||| || | |  ||||||||||||||| ||   ||| ||||||| || |||| ||||    
T  44755530 ttttgctttgaggtcgggagtcggtgtctagctgctattttgtttgacgtgatttggtgtttctctggtgtaccgtggtgaggggtgcccttctgatttg 44755629  T
Q  102 gtcatgaagtctggtgggtcgatcgattttgatt 135  Q
    ||| | |||||||||||| |||||  ||||||||    
T  44755630 gtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 1320697 - 1320832
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggttt 100  Q
    |||||||||||||||| |||||||||||||||||   ||||||||||||   |  |||||||||||| || | |  |||| ||||||| || | || |||    
T  1320697 ttttgcttcgagatcgggagttggtgtctagctgtaattttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgattt 1320796  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattc 136  Q
    |||||| |||||||||||| |||||  |||||||||    
T  1320797 ggtcataaagtctggtgggccgatcacttttgattc 1320832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 8745055 - 8745196
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    |||||||||||||||||  ||  |||||||||||||  | |||||||| | | |  ||||||||||||||| ||  ||||| ||||||| || |||| ||    
T  8745055 cttttgcttcgagatcggaaggcggtgtctagctgcaatgttgtttggtgtgatctggtgtttctctggtgcaccgagggtgaggggtggccttctgatt 8745154  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||| | || ||||||||| |||||  ||||||||||||||    
T  8745155 tggtcctaaattctggtgggccgatcacttttgattcgagat 8745196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 23983195 - 23983247
Alignment:
Q  98 tttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtca 150  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||    
T  23983195 tttggtcttgaagtctggtgggtcgatcgtttttgattcgagatcgggagtca 23983247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 46133456 - 46133304
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactag-ggttaggggtgtccgtctggttt 100  Q
    |||||||| ||||||| ||||||| || ||   || || ||||||||   ||| |||||||||||||||||||  | ||||||| ||| || |||| |||    
T  46133456 ttttgctttgagatcgggagttggagtttaatggcattattgtttggttggcttcggtgtttctctggtggaccggaggttaggagtgcccttctgattt 46133357  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||  |||||||||||| | |||||| |||||||| ||||| ||| |||||||    
T  46133356 ggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagtt 46133304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 9107065 - 9107203
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggtt-aggggtgtccgtctggtt 99  Q
    ||||||||||||||| |  |||||| |||||||| |  | ||||||| |  |||| ||||||||| |||||||| |||| | | ||||  |||| |  ||    
T  9107065 cttttgcttcgagattggtagttggagtctagctacaatcttgtttgcctggctatggtgtttctttggtggaccaggggtgatgggttcccgtatcatt 9107164  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcga 138  Q
    |||||||||||||||||||| |||||  |||||||||||    
T  9107165 tggtcatgaagtctggtgggacgatctcttttgattcga 9107203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 42533431 - 42533281
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||  ||||| |||||| || || ||||||| | |  ||||||||||||||| | |  |||| ||||||| ||  ||| ||    
T  42533431 cttttgcttcgagatcgggagtctgtgtccagctgcattcttatttggcgcgatgtggtgtttctctggtgcatcgggggtgaggggtgccctcctgatt 42533332  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtca 150  Q
    ||||| | ||||||||||||  ||||  |||||||||||||| ||| ||||    
T  42533331 tggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtca 42533281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 9428243 - 9428143
Alignment:
Q  41 ttgtttggcgagctacggtgtttctctggtggactaggg-ttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgag 139  Q
    |||||||||| |||||| | || |||||||||||||||| |||| |||| | || |||||||||| || ||||||||| | |||||  ||||||||||||    
T  9428243 ttgtttggcgggctacgttatt-ctctggtggactaggggttagaggtgcctgtttggtttggtcctgtagtctggtgagccgatcacttttgattcgag 9428145  T
Q  140 at 141  Q
    ||    
T  9428144 at 9428143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16954555 - 16954696
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactag-ggttaggggtgtccgtctggtt 99  Q
    |||||||||| |||||||||||||||||||||||||  | ||| |||||| | |  ||| ||||||||||| |  || ||| ||||||| || |||| ||    
T  16954555 cttttgcttccagatcgagagttggtgtctagctgcaatcttggttggcgcgatttggtctttctctggtgtatcagaggtgaggggtgcccttctgatt 16954654  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||| | ||||||||| |  |||||  ||||| ||||||||    
T  16954655 tggtcctaaagtctggttgaccgatcacttttgtttcgagat 16954696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 48058730 - 48058677
Alignment:
Q  103 tcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagttttt 156  Q
    |||||||||||||||||||||||| |||||||| ||||| ||  ||||||||||    
T  48058730 tcatgaagtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttt 48058677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 38485515 - 38485610
Alignment:
Q  58 gtgtttctctggtggactagggtta-ggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagt 152  Q
    |||||||||||||||||| ||| || |||||| || ||||  || ||  |||||||||||||| |||||  |||||||||||||| ||| ||||||    
T  38485515 gtgtttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 24324897 - 24324827
Alignment:
Q  80 ttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtca 150  Q
    ||||||||| || |||| ||||||| | |||| ||||||| ||||| ||||||||||||||| ||| ||||    
T  24324897 ttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtca 24324827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 12480881 - 12480941
Alignment:
Q  93 tctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| ||| ||| |||||| ||||||| |||||| |||||||||||||| ||| |||||||    
T  12480881 tctgattttgtcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagtt 12480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 38306272 - 38306316
Alignment:
Q  109 agtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||    
T  38306272 agtctggtgggccgatcacttttgattcgagattgggagtcagtt 38306316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7195417 - 7195265
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggttaggggtgtccgtctggttt 100  Q
    ||||||||||||||||| |||| |||| ||||||||  | |||||||||| | |   |||||||||||||| || ||||| ||||||| || |||| |||    
T  7195417 cttttgcttcgagatcgggagtcggtggctagctgcaatattgtttggcgtgatttagtgtttctctggtgtaccagggtgaggggtgcccttctgattt 7195318  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    || ||| |||||||||| | |||||  |||||||||||||| ||| |||||||    
T  7195317 ggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagtt 7195265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7392210 - 7392057
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| ||||||||||||||||||  | |||||||||  | |  |||||||||||| || | | ||||| ||||||| || |||| ||    
T  7392210 cttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatt 7392111  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| | |||||||||||  |||||  |||||||||||||| ||| |||||||    
T  7392110 tggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagtt 7392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 23426302 - 23426399
Alignment:
Q  57 ggtgtttctctggtggactagggtt-aggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||||||| ||||||||| ||||| ||||||  ||||||||||||||| |||||||||||||  ||| |  |||||||||||||||||| |||||||    
T  23426302 ggtgtttctttggtggactggggtttaggggtaaccgtctggtttggtcctgaagtctggtggaccgaacacttttgattcgagattgggagtcagtt 23426399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24072445 - 24072304
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    |||||||||| |||||| ||||||| || ||||||   | ||||||||  |||||| |||||||||||||||| | |||||| |||||| || |||| ||    
T  24072445 cttttgcttcaagatcgggagttggcgtttagctgtaatcttgtttggatagctacagtgtttctctggtggaccgagggtttggggtgcccttctgatt 24072346  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||| | ||||||||| ||  ||||| |||||||| |||||    
T  24072345 tggtcctaaagtctggttggctgatcgcttttgatttgagat 24072304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 31721580 - 31721732
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggttt 100  Q
    |||||||||| ||||| |||||||  |||||| || || ||||||||   |||||| ||||||||||||||| |  |||| ||||||| || |||| | |    
T  31721580 ttttgcttcgcgatcgggagttggcttctagcggcattattgtttggttggctacgatgtttctctggtggaccgggggtaaggggtgcccttctgatgt 31721679  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||  ||||||||  |||| |||||| |||||||||||||| ||| |||||||    
T  31721680 ggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagtt 31721732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8297370 - 8297415
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgttt 46  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  8297370 cttttgcttcgagatcgagagttggtgtctagctgcaattttgttt 8297415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 27713032 - 27713112
Alignment:
Q  62 ttctctggtggactagggttaggggt-gtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    |||||||||||||| ||| || |||| | |||||||||| |||| |||||||| ||||| |||||| ||||||||||||||    
T  27713032 ttctctggtggactggggataagggttgcccgtctggttgggtcctgaagtctagtgggccgatcgtttttgattcgagat 27713112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 8730819 - 8730972
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||   ||||||||||||||| || | |  ||| ||  ||||||||||| || ||||||||| ||| | ||||||| || | || ||    
T  8730819 cttttgcttcgagatcagaagttggtgtctagctactatctgattttgctggctacggtgttcctatggtggactgaggataaggggtgcccttatgatt 8730918  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| || ||||||||||  | |||| |||| ||||||||| ||| |||||||    
T  8730919 tggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagtt 8730972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 39184366 - 39184225
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    |||||| |||||||||| ||||||| |||||| |||  | ||||||||   || || |||||||||||||| ||  | |||| |||||| || |||| ||    
T  39184366 cttttgattcgagatcgggagttggcgtctagttgcaatcttgtttggttggcgacagtgtttctctggtgaaccgacggtttggggtgcccttctgatt 39184267  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    || |||||  |||||||||| |||||  ||||||||||||||    
T  39184266 tgatcatgtggtctggtgggccgatcacttttgattcgagat 39184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 33259050 - 33258920
Alignment:
Q  12 agatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtttggtcatgaag 110  Q
    |||||| |||| ||| ||||||| |  | |||||||||| | |  ||||||||||||||| ||  | ||| |||||||||| |||| ||||||  | |||    
T  33259050 agatcgggagtcggtatctagctacaatcttgtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaag 33258951  T
Q  111 tctggtgggtcgatcgattttgattcgagat 141  Q
    ||||||||| |||||  ||||||||||||||    
T  33258950 tctggtgggccgatcacttttgattcgagat 33258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 22675395 - 22675350
Alignment:
Q  108 aagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||||||||||  ||||||||||||||||||||| ||| |||||||    
T  22675395 aagtctggtggaccgatcgattttgattcgagatcgggagtcagtt 22675350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 1195 - 1043
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggactagggtt-aggggtgtccgtctggtt 99  Q
    ||||||||||||||| | ||||||||||||||||||  | |||||||      |  ||||||||||||||||||| ||  | ||||||  || |||| ||    
T  1195 cttttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatgaggggtc-ccttctgatt 1097  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||| |||||||    
T  1096 tggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 33968792 - 33968639
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    |||||||| ||||||||  |||||| ||||| |||  || ||||||||   |||||||||||||||||||| ||  |||||  |||||| || |||| ||    
T  33968792 cttttgctccgagatcggaagttggcgtctaactgtattcttgtttggttggctacggtgtttctctggtgaaccgagggtatggggtggccttctgatt 33968693  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| ||| ||||| |||||| ||||| |||||||||||||| ||| |||||||    
T  33968692 tggttatgtagtctagtgggtagatcgcttttgattcgagatcgggagtcagtt 33968639  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 32935518 - 32935365
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||| ||||||   |||||||||||||||||  | || ||||||  | || ||||||||| || |||| |  |||| ||||||  || |||| ||    
T  32935518 cttttgctttgagatcagaagttggtgtctagctgcaatcttctttggcttgttatggtgtttctatgatggatcgggggtgaggggttcccttctgatt 32935419  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| |||||||||||||| |||||| |||||||||||||| ||| |||||||    
T  32935418 tggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 32935365  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 3880762 - 3880618
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||| ||||||| |||| |||||||||||||| | |||||||||  | |  ||||||||||||||  | | ||||| || |||| || |||| ||    
T  3880762 cttttgctttgagatcgggagtcggtgtctagctgctatcttgtttggcatgatttggtgtttctctggtttaccgagggtgagaggtgcccttctgatt 3880663  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgg 144  Q
    ||||| | |||| ||||||| |||||  |||||||||||| ||||    
T  3880662 tggtcctaaagtttggtgggccgatcacttttgattcgagtttgg 3880618  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 26534805 - 26534745
Alignment:
Q  93 tctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| ||||||| |||||||||||||| |||||  |||||||||||||||||| |||||||    
T  26534805 tctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagtt 26534745  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 34090374 - 34090419
Alignment:
Q  109 agtctggtgggtcgatcgattttgattcgagattgggggtcagttt 154  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  34090374 agtctggtgggtcgatcaattttgattcgagatcgggagtcagttt 34090419  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 20701982 - 20701841
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||| ||||||| || | |||||||||||||   ||||||||||| | |  ||| ||||||||||| | |  |||| ||||||| || |||| ||    
T  20701982 cttttgctttgagatcgggattcggtgtctagctgcaaatttgtttggcgtgatttggtttttctctggtgtaccgggggtgaggggtgcccttctgatt 20701883  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    |||||||  || |||||| | |||||  ||||||||||||||    
T  20701882 tggtcatttagactggtgtgccgatcacttttgattcgagat 20701841  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 5556472 - 5556625
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggact-agggttaggggtgtccgtctggtt 99  Q
    |||||| ||||||||||  |||||||||||||||    | ||||||| |  |||||| ||||||||| ||||||  || ||| |||||| || | || ||    
T  5556472 cttttgattcgagatcggaagttggtgtctagctaacatcttgtttgtctggctacgatgtttctctcgtggaccgagtgtttggggtgcccttttgatt 5556571  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| || ||||||||||| |||||| |||||||||||||| ||| |||||||    
T  5556572 tggtcttgtagtctggtggggcgatcgcttttgattcgagatcgggagtcagtt 5556625  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 37123284 - 37123437
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    ||||||||||||||||| |||| |||||||||||||  |||||||||||| | |  |||||||||||| || | | | ||  ||||||| || | || ||    
T  37123284 cttttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttt 37123383  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||| | || | ||||||| |||||  |||||||||||||||||| |||||||    
T  37123384 tggtcctaaattttggtgggccgatcacttttgattcgagattgggagtcagtt 37123437  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 47945668 - 47945761
Alignment:
Q  62 ttctctggtggactaggg--ttaggggtgtccgtctggtttggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    ||||||||||||| ||||  | ||||||| |||||||||| |||| | ||||| |||||| |||||  |||||||||||||| ||| |||||||    
T  47945668 ttctctggtggaccagggggtaaggggtgcccgtctggttgggtcctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagtt 47945761  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 7826078 - 7826131
Alignment:
Q  164 tgagttaactcatgtaggggcattttcggaagtttgattaggaatgagcaaaac 217  Q
    |||||||||||| | ||||||||| ||| ||||||| |||||||||||||||||    
T  7826078 tgagttaactcacgcaggggcattatcgcaagtttggttaggaatgagcaaaac 7826131  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 7828401 - 7828454
Alignment:
Q  164 tgagttaactcatgtaggggcattttcggaagtttgattaggaatgagcaaaac 217  Q
    |||||||||||| | ||||||||| ||| ||||||| |||||||||||||||||    
T  7828401 tgagttaactcacgcaggggcattatcgcaagtttggttaggaatgagcaaaac 7828454  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 23328527 - 23328482
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttg 47  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||    
T  23328527 ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttg 23328482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 30935569 - 30935428
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttg-tttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    |||||||||||||| | ||||||| ||||||| || || ||| |||||   ||||| |||||||||||||||| |  |||| ||||||| || |||| ||    
T  30935569 ttttgcttcgagattgggagttggcgtctagcggcattattgttttggttggctacagtgtttctctggtggaccgggggtaaggggtgcccttctgatt 30935470  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||  |||||| |||||||  ||||| ||||||||| ||||    
T  30935469 tggttttgaagtttggtgggctgatcgcttttgattcaagat 30935428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 27398861 - 27398933
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggac 74  Q
    |||||||||||||||| ||||| |||||||||| |  | |||||||||  |||| ||||||||||| ||||||    
T  27398861 ttttgcttcgagatcgggagtttgtgtctagctacaatcttgtttggctggctatggtgtttctctagtggac 27398933  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25647586 - 25647656
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtg 71  Q
    |||||||||||||| || |||| |||||||||||||  || ||||||||| | |  |||||||||||||||    
T  25647586 cttttgcttcgagaacgggagtcggtgtctagctgcaattctgtttggcgtgatttggtgtttctctggtg 25647656  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 7823226 - 7823275
Alignment:
Q  168 ttaactcatgtaggggcattttcggaagtttgattaggaatgagcaaaac 217  Q
    |||||||| | ||||||||| ||| ||||||| |||||||||||||||||    
T  7823226 ttaactcacgcaggggcattatcgcaagtttggttaggaatgagcaaaac 7823275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 823613 - 823541
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtggac 74  Q
    ||||||||| |||||  |||||||||||||| |||  | |||||||||  | || ||||||||||||||||||    
T  823613 ttttgcttcaagatcaggagttggtgtctagttgcaatcttgtttggcttgttatggtgtttctctggtggac 823541  T

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Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 36610 - 36762
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggttt 100  Q
    ||||| |||||||||  |||| |||||||||||||  |||||||||||| | |  ||||||||||||||| | | || || ||||||| || |||| |||    
T  36610 ttttgattcgagatcaggagtcggtgtctagctgcaattttgtttggcgtgatttggtgtttctctggtgtaccgagagtgaggggtgcccttctgattt 36709  T
Q  101 ggtcatgaagtctggtgggtcgatcgattttgattcgagattgggggtcagtt 153  Q
    |||| | |||||||| |||  ||||  |||||||||||||| ||| |||||||    
T  36710 ggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagtt 36762  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 58029 - 58099
Alignment:
Q  1 cttttgcttcgagatcgagagttggtgtctagctgcttttttgtttggcgagctacggtgtttctctggtg 71  Q
    ||||||||||||||||| |||| | |||||||||||  | |||||||||| | |  |||||||||||||||    
T  58029 cttttgcttcgagatcgggagtcgttgtctagctgcaatcttgtttggcgtgatttggtgtttctctggtg 58099  T

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Target: scaffold0620 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 3841 - 3886
Alignment:
Q  109 agtctggtgggtcgatcgattttgattcgagattgggggtcagttt 154  Q
    ||||||||||| ||||| ||||||||||||||| ||| ||||||||    
T  3841 agtctggtgggccgatcaattttgattcgagatcgggagtcagttt 3886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 19285 - 19426
Alignment:
Q  2 ttttgcttcgagatcgagagttggtgtctagctgcttttttg-tttggcgagctacggtgtttctctggtgga-ctagggttaggggtgtccgtctggtt 99  Q
    |||||||||||||||| |||| ||||||||||||| || ||| ||||||    |  | ||||||||||||  | | | ||| ||||||| || |||| ||    
T  19285 ttttgcttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatt 19384  T
Q  100 tggtcatgaagtctggtgggtcgatcgattttgattcgagat 141  Q
    ||||| | |||||||||||| |||||  ||||||||||||||    
T  19385 tggtcctaaagtctggtgggccgatcacttttgattcgagat 19426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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