View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7084_low_4 (Length: 544)
Name: NF7084_low_4
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7084_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 22155417 - 22155743
Alignment:
| Q |
17 |
ttcccctctttcccccaacactatcatcacttctgtcacctcctttctctctcttcatctaagaaacttcaataacaatctttccatctttgtacaagta |
116 |
Q |
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| T |
22155417 |
ttcccctctttcccccaacactatcatcacttctgtcacctcctttctctctcttcatctaggaaacttcaatcacaatctttccatctttgtacaagta |
22155516 |
T |
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| Q |
117 |
tagtctacagtttcatttcattccgtgttcctaactaacaaagcatgaaacatcaacaaaaccttaccctccaaagaagtacaagcaccagcgccaccat |
216 |
Q |
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| T |
22155517 |
tagtctacagtttcatttcattccgtgttcctaactaacaaagcatgaaacaacaacaaaaccttaccctccaaagaagcacaagcacaagcgccaccat |
22155616 |
T |
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| Q |
217 |
cacaacaagaaacaaccgtagaatcatcccttcaaaccaccgactctcagaatccgatgatttctccggcaaccttctcataaggcaaggatcatcaccc |
316 |
Q |
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| T |
22155617 |
cacaacaagaaacaatcgtagaatcatcccttcaaaccaccgactctcagaatccgatgatttctccggcaaccttctcataagacaaggatcatcaccc |
22155716 |
T |
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| Q |
317 |
tcaatctcttccttctccaatcaacgt |
343 |
Q |
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| T |
22155717 |
tcaatctcttccttctccaatcaacgt |
22155743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 376 - 538
Target Start/End: Original strand, 22155776 - 22155938
Alignment:
| Q |
376 |
gaagctatcttcacttatacgttctttcctcaacatcttcacttttcaaaccatatttccaacatgcaactggctcaccattccttcccccctctcctcc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22155776 |
gaagctatcttcacttatacgttctttcctcaacatcttcacttttcaaaccatatttccaacatgcaactggctcaccattccttccaccctctcctcc |
22155875 |
T |
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| Q |
476 |
acttcaatctccccttcactcggccgcaaagtcaccggaacactcttcgggaaccgccgtggt |
538 |
Q |
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| T |
22155876 |
acttcaatctccccttcactcggccgcaaagtcaccggaacactcttcgggaaccgccgtggt |
22155938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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