View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7084_low_5 (Length: 413)

Name: NF7084_low_5
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7084_low_5
NF7084_low_5
[»] chr2 (11 HSPs)
chr2 (15-396)||(14565707-14566087)
chr2 (115-226)||(25275645-25275755)
chr2 (107-212)||(4779614-4779719)
chr2 (83-212)||(7381697-7381825)
chr2 (95-194)||(34392136-34392235)
chr2 (83-191)||(21603964-21604072)
chr2 (93-194)||(23863858-23863957)
chr2 (97-192)||(10163501-10163597)
chr2 (83-157)||(37358013-37358087)
chr2 (83-120)||(3668345-3668382)
chr2 (85-117)||(34904313-34904345)
[»] chr7 (6 HSPs)
chr7 (83-226)||(35341541-35341684)
chr7 (83-186)||(48250159-48250262)
chr7 (109-212)||(48072418-48072521)
chr7 (83-171)||(31306951-31307040)
chr7 (142-211)||(32694608-32694677)
chr7 (85-133)||(40856399-40856447)
[»] chr5 (10 HSPs)
chr5 (83-212)||(33858575-33858704)
chr5 (83-173)||(13086758-13086848)
chr5 (83-194)||(13015386-13015498)
chr5 (83-194)||(38010668-38010780)
chr5 (83-226)||(19357285-19357427)
chr5 (93-194)||(11607589-11607690)
chr5 (83-194)||(13478099-13478211)
chr5 (83-194)||(29989967-29990079)
chr5 (83-194)||(39570098-39570209)
chr5 (94-212)||(33271630-33271748)
[»] chr8 (8 HSPs)
chr8 (93-211)||(18168400-18168519)
chr8 (93-211)||(18631957-18632076)
chr8 (83-174)||(1514808-1514899)
chr8 (83-194)||(41179618-41179729)
chr8 (90-211)||(4708345-4708466)
chr8 (93-212)||(24337867-24337986)
chr8 (83-230)||(32825854-32826001)
chr8 (98-218)||(11254059-11254178)
[»] chr4 (15 HSPs)
chr4 (83-194)||(52012783-52012895)
chr4 (83-226)||(22343342-22343485)
chr4 (83-218)||(35869602-35869737)
chr4 (93-218)||(12473719-12473844)
chr4 (93-218)||(12528128-12528253)
chr4 (93-194)||(21260809-21260910)
chr4 (83-155)||(55590487-55590559)
chr4 (72-174)||(49999663-49999765)
chr4 (84-212)||(51811920-51812048)
chr4 (96-172)||(52910126-52910202)
chr4 (101-171)||(46719953-46720023)
chr4 (93-157)||(9799455-9799519)
chr4 (93-157)||(34829175-34829239)
chr4 (83-194)||(33249429-33249540)
chr4 (98-174)||(47943178-47943255)
[»] chr3 (13 HSPs)
chr3 (83-194)||(47186180-47186292)
chr3 (83-218)||(39498701-39498835)
chr3 (83-194)||(42664678-42664790)
chr3 (93-174)||(31187145-31187226)
chr3 (93-174)||(34029366-34029447)
chr3 (83-212)||(44380259-44380388)
chr3 (83-194)||(33509685-33509796)
chr3 (83-186)||(50934505-50934609)
chr3 (139-212)||(35094609-35094682)
chr3 (93-194)||(37742740-37742841)
chr3 (83-212)||(47426355-47426484)
chr3 (130-194)||(6022998-6023063)
chr3 (83-144)||(10018671-10018732)
[»] chr1 (7 HSPs)
chr1 (83-174)||(6223056-6223147)
chr1 (97-212)||(8462147-8462262)
chr1 (93-159)||(35998267-35998333)
chr1 (83-194)||(8809694-8809806)
chr1 (83-211)||(2569042-2569169)
chr1 (83-194)||(29119379-29119490)
chr1 (83-194)||(32676141-32676252)
[»] chr6 (3 HSPs)
chr6 (83-194)||(34245572-34245684)
chr6 (73-171)||(11113551-11113649)
chr6 (83-119)||(7234490-7234526)
[»] scaffold0032 (1 HSPs)
scaffold0032 (83-212)||(34199-34327)
[»] scaffold0263 (1 HSPs)
scaffold0263 (108-259)||(23089-23240)
[»] scaffold0519 (1 HSPs)
scaffold0519 (98-218)||(11215-11334)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 14566087 - 14565707
Alignment:
Q  15 cactactcaaattatcaccggtgttgtatgcgcaaactagttaaggggttatgaacatggatcacacatgtgtatcactaaggtaccaatgttatatatc 114  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||| |||| |||||| |||||||||||||||||||||||||    
T  14566087 cactactcaaattatcactagtgttgtatgcgcaaactagttaaggggttatagacatggataacacgtgtgtaccactaaggtaccaatgttatatatc 14565988  T
Q  115 attgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattctaattgac 214  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||    
T  14565987 attgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatatagttttttaaaggatgtgccatgtaacacattttaactgac 14565888  T
Q  215 caattatatataacatgagtaccttaatgatacgcaagtgttatctaatgtggtatatagcgtcttgtatcatgtgcctcaagatcaattccggatgaaa 314  Q
    ||||| |||||||||| |||| ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| | || || ||||||||    
T  14565887 caattgtatataacattagtatcttaatgatacacaagtgctatctaatatggtatagagcgtcttgtatcatgtgcctcaag-ttaagtctggatgaaa 14565789  T
Q  315 tatatataaaaatttgacaatttatatatgagtagtgctagcctcacctaacattaccacagtcatacaagggttgatacat 396  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14565788 tatctataaaaatttgacaatttatatatgagtagtgctagcctcacctaacattaccacagtcatacaagggttgatacat 14565707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 25275755 - 25275645
Alignment:
Q  115 attgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattctaattgac 214  Q
    ||||||||||||  |||||| || || |||||||| ||| ||| ||||| |||||||||| || |||||||||||||||| || ||||||||||||||      
T  25275755 attgatcaattattgtgtgccacctatcaatgttacttt-taaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattgga 25275657  T
Q  215 caattatatata 226  Q
    |||| |||||||    
T  25275656 caatgatatata 25275645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 4779614 - 4779719
Alignment:
Q  107 tatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattc 206  Q
    |||||| ||||||||| ||| |||||||  | || |||||||| ||||||| ||||| |||||||||| || ||||||||||||| || || | ||||||    
T  4779614 tatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattc 4779713  T
Q  207 taattg 212  Q
    ||||||    
T  4779714 taattg 4779719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 7381697 - 7381825
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| ||||||  ||||  |||||| ||||||| |  ||||||||||| ||||||| | ||| |||||||||| || ||||    
T  7381697 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata-tttttta 7381795  T
Q  183 aaggatgtgccatgtaatacattctaattg 212  Q
    ||||||||| ||||| | ||||| ||||||    
T  7381796 aaggatgtgtcatgtgacacattttaattg 7381825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 34392235 - 34392136
Alignment:
Q  95 aggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgcca 194  Q
    ||||||||||| |||||| |||||  |||||| ||||||| || ||||||| ||| ||||||| | ||| |||||||||| || |||||||| |||||||    
T  34392235 aggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatatttttttaaagggtgtgcca 34392136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 21603964 - 21604072
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||| |||||| |||||| |||||   || ||||||||||| ||||||| |  || |||||||||| || ||||    
T  21603964 tgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatatactttttta 21604063  T
Q  183 aaggatgtg 191  Q
     ||||||||    
T  21604064 taggatgtg 21604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 23863957 - 23863858
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||||||||| |||||   |||| ||||||| ||||||| || ||||||||||| ||||||| | ||| ||||||||||  | |||||||| |||||    
T  23863957 taaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgc 23863860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 10163501 - 10163597
Alignment:
Q  97 gtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttatttaaaggatgtgc 192  Q
    |||||||||||||||| |||||| |||| ||| ||||| ||||||  || ||| ||||||| || || |||||||||| ||| ||||||| ||||||    
T  10163501 gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgc 10163597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 37358087 - 37358013
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataa 157  Q
    ||||||||| ||||||||||||| |||||| ||||||  ||||| ||||||  || || |||||||| |||||||    
T  37358087 tgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataa 37358013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 3668382 - 3668345
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgat 120  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  3668382 tgtgtatcattaaggtaccaatgttatataacattgat 3668345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 34904345 - 34904313
Alignment:
Q  85 tgtatcactaaggtaccaatgttatatatcatt 117  Q
    ||||||| |||||||||||||||||||||||||    
T  34904345 tgtatcattaaggtaccaatgttatatatcatt 34904313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 35341541 - 35341684
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||| |||||| |||||| ||||||| || ||||||||||| ||||||| |  || |||||||||| || ||||    
T  35341541 tgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 35341640  T
Q  183 aaggatgtgccatgtaatacattctaattgaccaattatatata 226  Q
    |||| ||||||| || | ||||||||||||  |||| |||||||    
T  35341641 aagggtgtgccacgtgacacattctaattggacaatgatatata 35341684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 48250159 - 48250262
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||||||||| ||||||| ||||||| || ||||||||||| ||||||  | ||| |||||||||  || ||||    
T  48250159 tgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatattttttttta 48250258  T
Q  183 aagg 186  Q
    ||||    
T  48250259 aagg 48250262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 48072418 - 48072521
Alignment:
Q  109 tatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattcta 208  Q
    |||| ||||||||||||| ||||||| ||||  |||||||||||||||| || || ||||||| || || |||||||| ||||||| ||   ||||||||    
T  48072418 tataccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtatttttttaaagggtgtgccacgtggcacattcta 48072517  T
Q  209 attg 212  Q
    ||||    
T  48072518 attg 48072521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 31307040 - 31306951
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaatt-aaagtgtgctacataccaatgttattttataagtacttcatttgat 171  Q
    |||||| || ||| ||| ||||| ||||||||||||  ||||| |||||||||||| ||||||||||| ||||||| | ||| |||||||    
T  31307040 tgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 32694677 - 32694608
Alignment:
Q  142 caatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattctaatt 211  Q
    |||||||| ||||||| | ||| |||||||||| || |||||||| ||||||| || | |||||||||||    
T  32694677 caatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgacacattctaatt 32694608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 40856399 - 40856447
Alignment:
Q  85 tgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtg 133  Q
    ||||||| |||||||| |||| ||||||| |||||||||||| ||||||    
T  40856399 tgtatcattaaggtactaatgatatatattattgatcaattagagtgtg 40856447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 33858704 - 33858575
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||  ||||||||||||| |||||| ||||||| || ||||||||||| ||||||| |  || |||||||||| || ||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  183 aaggatgtgccatgtaatacattctaattg 212  Q
    |||| ||||||| || | ||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattg 33858575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 13086758 - 13086848
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatat 173  Q
    |||||| || |||||||||||||||||||| |||||| |||| | ||||||| |||||||||||||||||||||| || || |||||||||    
T  13086758 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 13015386 - 13015498
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || |||||||||||||||||||| |||||| |||| | ||||||| |||||||||||||| ||||||| || || ||||||||||  || |||    
T  13015386 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatatatttttt 13015485  T
Q  182 aaaggatgtgcca 194  Q
    |||| ||||||||    
T  13015486 aaagtatgtgcca 13015498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 38010780 - 38010668
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || |||||||||||||||||||| |||||  |||| | ||||||| |||||||||||||| ||||||| ||||| |||||||||| ||| |||    
T  38010780 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 38010681  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  38010680 aaagtgtgtgcca 38010668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 19357427 - 19357285
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || || |||||||||| |||||| |||||  |||||| ||||||| || ||||||| ||| ||||||| | ||| |||||||||| || ||||    
T  19357427 tgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatattt-ttta 19357329  T
Q  183 aaggatgtgccatgtaatacattctaattgaccaattatatata 226  Q
    |||||||| ||| || | ||||||||||||  |||| |||||||    
T  19357328 aaggatgtcccacgtgacacattctaattggacaatgatatata 19357285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 11607690 - 11607589
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||||||||| |||||| |||||| |||||| ||||||| || ||||||| ||| ||||||| |  || |||||||||| || |||||||| |||||    
T  11607690 taaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtgc 11607591  T
Q  193 ca 194  Q
    ||    
T  11607590 ca 11607589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 13478211 - 13478099
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || ||||| |||||||||||||| |||||| |||| | ||||||| |||||||| ||||| ||||||| || || |||||||||| ||| |||    
T  13478211 tgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatatatgtttttt 13478112  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  13478111 aaagtgtgtgcca 13478099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 29989967 - 29990079
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || ||||||| |||||||||||| |||||| |||| | ||||||| |||||||||||||| ||||||| |  || |||||||||| ||| |||    
T  29989967 tgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatgtttttt 29990066  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  29990067 aaagtgtgtgcca 29990079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 39570209 - 39570098
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    ||||||||| ||| ||| ||||| |||||| |||||  |||||| ||||||  || ||||||||||| ||||||| |  || |||||||||| || ||||    
T  39570209 tgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatactttttta 39570110  T
Q  183 aaggatgtgcca 194  Q
    |||| |||||||    
T  39570109 aagggtgtgcca 39570098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 33271630 - 33271748
Alignment:
Q  94 aaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgcc 193  Q
    |||||||||||| ||||||||||||  |||||| ||||||  |  || |||||||| || |||| | ||| |||||||||| || ||||||||||| |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  194 atgtaatacattctaattg 212  Q
    | ||   ||||||||||||    
T  33271730 acgtggcacattctaattg 33271748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 18168400 - 18168519
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttatttaaaggatgtg 191  Q
    ||||||||||||| |||||||||||||||||||| ||||| | || ||||||| ||| ||||||| ||||| ||||||||||  || |||||||||||||    
T  18168400 taaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaaggatgtg 18168499  T
Q  192 ccatgtaatacattctaatt 211  Q
    ||| || | ||| |||||||    
T  18168500 ccacgtgacacaatctaatt 18168519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 18631957 - 18632076
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttatttaaaggatgtg 191  Q
    ||||||||||||| |||||||||||||||||||| ||||| | || ||||||| ||| ||||||| ||||| ||||||||||  || |||||||||||||    
T  18631957 taaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaaggatgtg 18632056  T
Q  192 ccatgtaatacattctaatt 211  Q
    ||| || | ||| |||||||    
T  18632057 ccacgtgacacaatctaatt 18632076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 1514808 - 1514899
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata 174  Q
    |||||| || |||||||||||||||||||| ||||||||||| | ||||| | |||||||||||||| ||||||| |  || ||||||||||    
T  1514808 tgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 41179729 - 41179618
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| ||||||||||||  |||||||||||||  || |||| |||||| ||||||| |  || |||| ||||| || ||||    
T  41179729 tgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatattttttta 41179630  T
Q  183 aaggatgtgcca 194  Q
    | ||||||||||    
T  41179629 atggatgtgcca 41179618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 4708466 - 4708345
Alignment:
Q  90 cactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatg 189  Q
    ||||||||||||||||  |||||||||    |||||||||||||  || ||||||||||| ||||||| |  || ||||||||||  | |||||||| ||    
T  4708466 cactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaagggtg 4708367  T
Q  190 tgccatgtaatacattctaatt 211  Q
    ||||| ||   |||||||||||    
T  4708366 tgccacgtggcacattctaatt 4708345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 24337986 - 24337867
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||| ||||| |||||| ||| | ||||||| ||||||| |  ||||||||||| ||||||  | ||| ||||||||||  | |||||||| |||||    
T  24337986 taaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatatttttaaagggtgtgc 24337887  T
Q  193 catgtaatacattctaattg 212  Q
    ||  ||  ||||||||||||    
T  24337886 cacatagcacattctaattg 24337867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 32826001 - 32825854
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||| ||| ||||||| |||| |||||  |||||| ||| ||  ||||| ||||||||||||||| ||  || |||||||||| || || |    
T  32826001 tgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatattttttaa 32825902  T
Q  183 aaggatgtgccatgtaatacattctaattgaccaattatatataacat 230  Q
    |||| |||| ||  | | ||||  |||||| |||||||||||||||||    
T  32825901 aaggttgtgtcacatgacacatcttaattggccaattatatataacat 32825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 11254178 - 11254059
Alignment:
Q  98 taccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgt 197  Q
    |||||||| ||||||||||||| || ||| ||| | | || ||||||||||| ||||||| |  || ||||||||||  | |||||||| ||||||| ||    
T  11254178 taccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacatttttaaagggtgtgccacgt 11254080  T
Q  198 aatacattctaattgaccaat 218  Q
     | ||||||||| ||| ||||    
T  11254079 gacacattctaactgagcaat 11254059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 52012783 - 52012895
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || |||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||| ||||||| |  || |||||||||| ||| |||    
T  52012783 tgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatatatgtttttt 52012882  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  52012883 aaagtgtgtgcca 52012895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 22343342 - 22343485
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||| ||||| ||||||||||||| |||||| ||||||  |  || |||||||| ||||||| | ||| |||||||||| |  ||||    
T  22343342 tgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatattatttta 22343441  T
Q  183 aaggatgtgccatgtaatacattctaattgaccaattatatata 226  Q
    ||||||||||||  | | ||||||||||||| |||| |||||||    
T  22343442 aaggatgtgccacatgacacattctaattgaacaatgatatata 22343485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 35869737 - 35869602
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||| |||||| |||||| | ||||| || ||||||||||| | ||||| |  || |||||||||| || ||||    
T  35869737 tgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatactttttta 35869638  T
Q  183 aaggatgtgccatgtaatacattctaattgaccaat 218  Q
    |||| ||||||| || | ||||||||||||| ||||    
T  35869637 aagggtgtgccacgtgacacattctaattgaacaat 35869602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 12473719 - 12473844
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||||||||| |||||| |||||  |||||| ||||||| || ||||||||||| ||||||  | ||| |||||||||| || |||||||| ||||     
T  12473719 taaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtgg 12473818  T
Q  193 catgtaatacattctaattgaccaat 218  Q
    ||  | | ||||||||||||| ||||    
T  12473819 cacatgacacattctaattgagcaat 12473844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 12528128 - 12528253
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||||||||| |||||| |||||  |||||| ||||||| || ||||||||||| ||||||  | ||| |||||||||| || |||||||| ||||     
T  12528128 taaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagggtgtgg 12528227  T
Q  193 catgtaatacattctaattgaccaat 218  Q
    ||  | | ||||||||||||| ||||    
T  12528228 cacatgacacattctaattgagcaat 12528253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 21260809 - 21260910
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||||||||| ||||||||||||  |||||| ||||||  || ||||||||||| ||||||| |  || |||||||||| || |||||||| |||||    
T  21260809 taaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtgc 21260908  T
Q  193 ca 194  Q
    ||    
T  21260909 ca 21260910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 55590487 - 55590559
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttat 155  Q
    |||||| || ||||||||||||| |||||||||||||||||||| ||||||  || ||||||||||| |||||    
T  55590487 tgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 49999765 - 49999663
Alignment:
Q  72 tggatcacacatgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgat 171  Q
    ||||| |||| |||||| ||  ||| ||| |||||||| | |||||| ||||||| ||||||  |||||||||||||||||||||| | ||| |||||||    
T  49999765 tggataacacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgat 49999666  T
Q  172 ata 174  Q
    |||    
T  49999665 ata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 51811920 - 51812048
Alignment:
Q  84 gtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaa 183  Q
    ||||| || ||||||| ||| | ||||||| ||||  |||||| ||| ||| || ||||||||||| ||||||| |  ||  ||||||||| || |||||    
T  51811920 gtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatatttttttaa 51812019  T
Q  184 aggatgtgccatgtaatacattctaattg 212  Q
    ||| |||||||||| | ||||||||||||    
T  51812020 agggtgtgccatgtgacacattctaattg 51812048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 52910202 - 52910126
Alignment:
Q  96 ggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgata 172  Q
    ||||||||||||||||| |||||  |||||||||||||| || ||||||| ||| ||||||| | ||| ||||||||    
T  52910202 ggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
Q  101 caatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgat 171  Q
    |||||||||||| |||||| |||| | ||||||| |||||| ||||||| ||||||| ||||| |||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 9799519 - 9799455
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataa 157  Q
    |||||||||||||||||||| |||||| |||  | | ||||| |||||||||||||| |||||||    
T  9799519 taaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataa 9799455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 34829239 - 34829175
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataa 157  Q
    ||||||||||||| ||||||||| ||  |||||||||||||  || ||||||||||| |||||||    
T  34829239 taaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataa 34829175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 33249540 - 33249429
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || |||||||| |||| ||||||  ||||  |||||| ||||||  || ||||||||||| ||||||| | ||| ||||||||||  | ||||    
T  33249540 tgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatattttta 33249441  T
Q  183 aaggatgtgcca 194  Q
    |||| |||||||    
T  33249440 aagggtgtgcca 33249429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 47943178 - 47943255
Alignment:
Q  98 taccaatgttatatatcatt-gatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata 174  Q
    |||||||||||||||  ||| || |||| ||| ||||| |||||||||| ||||||||||| || || ||||||||||    
T  47943178 taccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatata 47943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 47186180 - 47186292
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || |||||||||||||||||||| |||||  |||| | ||||||| |||||||||||||| ||||||| ||||| |||||||||| ||| |||    
T  47186180 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 47186279  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  47186280 aaagtgtgtgcca 47186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 39498835 - 39498701
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||| ||||||||| ||||||| |||| ||||||||||||||  || || | |||||||||||||| || || |||| ||||| || ||||    
T  39498835 tgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatataatt-ttta 39498737  T
Q  183 aaggatgtgccatgtaatacattctaattgaccaat 218  Q
    |||||||||||| || | ||||||||||||| ||||    
T  39498736 aaggatgtgccacgtgacacattctaattgagcaat 39498701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 42664678 - 42664790
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || ||||||||||| |||||||| |||||| |||| | ||||||| |||||||||||||||||||||| |  || |||||||||| ||| |||    
T  42664678 tgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatatatgtttttt 42664777  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  42664778 aaagtgtgtgcca 42664790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 31187226 - 31187145
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata 174  Q
    |||||||||||||||||||| |||||| |||| | ||||||| |||||||||||||| ||||||| |  || ||||||||||    
T  31187226 taaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 34029447 - 34029366
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata 174  Q
    |||||||||||||||||||| ||||||||||| | ||||||| |||||| ||||||| ||||||| |  || ||||||||||    
T  34029447 taaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 44380259 - 44380388
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| ||||||  ||||| |||||| ||||||  || || |||| ||| ||||||| | ||| |||||||||| || ||||    
T  44380259 tgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatactttttta 44380358  T
Q  183 aaggatgtgccatgtaatacattctaattg 212  Q
    |||| ||||||| || | ||||||||||||    
T  44380359 aagggtgtgccacgtgacacattctaattg 44380388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 33509685 - 33509796
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || |||||||| |||  ||||||||||||| |||||| ||||||| || ||||||| ||| ||||||  | ||| ||||||| || || ||||    
T  33509685 tgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttta 33509784  T
Q  183 aaggatgtgcca 194  Q
    ||||||||||||    
T  33509785 aaggatgtgcca 33509796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 50934505 - 50934609
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || ||||||||||||| |||||| |||||  |||||| ||||||| || ||||||||||| ||||||| | | | ||||||||||  ||||||    
T  50934505 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatattttattt 50934604  T
Q  182 aaagg 186  Q
    |||||    
T  50934605 aaagg 50934609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 35094609 - 35094682
Alignment:
Q  139 taccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattctaattg 212  Q
    ||||||||||| ||||||| || || |||||||||| || ||||||||||||| || || | ||||||||||||    
T  35094609 taccaatgttactttataaatattttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattg 35094682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 37742740 - 37742841
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgc 192  Q
    ||||||||||||| |||||||||||| ||||||| ||| ||| || |||||||||||  |||  | | ||| |||||||||| || |||||||  |||||    
T  37742740 taaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgtgc 37742839  T
Q  193 ca 194  Q
    ||    
T  37742840 ca 37742841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 47426355 - 47426484
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||  |||||| |||||  |||||| ||||||  || || |||||||| ||||||  | ||| |||||||||| || ||||    
T  47426355 tgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatattttttta 47426454  T
Q  183 aaggatgtgccatgtaatacattctaattg 212  Q
    |||| |||||||  |  |||||||||||||    
T  47426455 aagggtgtgccacatggtacattctaattg 47426484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 6022998 - 6023063
Alignment:
Q  130 tgtgctacataccaatgttattttataagtacttcatttgatata-gttatttaaaggatgtgcca 194  Q
    ||||| |||||| ||||||||||| ||||||||| ||||||||||  || |||||||| |||||||    
T  6022998 tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgcca 6023063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 10018732 - 10018671
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaa 144  Q
    |||||| || ||| |||||||||||||||| ||||| ||||| ||||||||| || ||||||    
T  10018732 tgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 6223056 - 6223147
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata 174  Q
    |||||| || ||| ||| ||||||||||||||||||||||||||| |||||  | ||| ||||||||||||||||||| || ||||||||||    
T  6223056 tgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatata 6223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 8462147 - 8462262
Alignment:
Q  97 gtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatg 196  Q
    ||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||| |  || |||| ||||| || ||||||||  |||||| |    
T  8462147 gtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgtgccacg 8462246  T
Q  197 taatacattctaattg 212  Q
    | | ||||| ||||||    
T  8462247 tgacacattttaattg 8462262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 35998267 - 35998333
Alignment:
Q  93 taaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagt 159  Q
    |||||||||||||||||||| ||||||| ||| | ||||||| ||||| ||||||||||||||||||    
T  35998267 taaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagt 35998333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 8809806 - 8809694
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || |||||||||||||||||||| |||||| |||| | ||||||| || ||||||||||| ||||||| |  || |||||||||| ||| |||    
T  8809806 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatatatgtttttt 8809707  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  8809706 aaagtgtgtgcca 8809694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 2569042 - 2569169
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||||||||   |||||| ||||||| || |||||||||||  |||  | | ||| |||||||||| || ||||    
T  2569042 tgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tttttta 2569140  T
Q  183 aaggatgtgccatgtaatacattctaatt 211  Q
    |||| ||||||||||   |||||||||||    
T  2569141 aagggtgtgccatgtggcacattctaatt 2569169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 29119490 - 29119379
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||| |||||  |||||| ||||||| || || || ||||| ||||||  | ||| |||||||||| || ||||    
T  29119490 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatattttttta 29119391  T
Q  183 aaggatgtgcca 194  Q
    |||| |||||||    
T  29119390 aagggtgtgcca 29119379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 32676141 - 32676252
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| |||||| |||||  |||||| | ||  | || ||||||||||| ||||||| | ||| |||||||||| || ||||    
T  32676141 tgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatattttttta 32676240  T
Q  183 aaggatgtgcca 194  Q
    ||| ||||||||    
T  32676241 aagcatgtgcca 32676252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 34245572 - 34245684
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatata-gttattt 181  Q
    |||||| || |||||||  ||||||||||| |||||| |||| ||||||||| || ||||||||||| ||||||| ||||| |||||||||| ||| |||    
T  34245572 tgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatatatgtttttt 34245671  T
Q  182 aaaggatgtgcca 194  Q
    ||||  |||||||    
T  34245672 aaagtgtgtgcca 34245684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 11113551 - 11113649
Alignment:
Q  73 ggatcacacatgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgat 171  Q
    |||| |||| |||||| || ||||||||||||| |||||| ||||||  ||| | ||||||  |||||| ||||||| ||| ||||| ||| |||||||    
T  11113551 ggataacacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 7234526 - 7234490
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattga 119  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  7234526 tgtgtatcattaaggtaccaacgttatatatcattga 7234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 34199 - 34327
Alignment:
Q  83 tgtgtatcactaaggtaccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttattta 182  Q
    |||||| || ||||||||||||| ||||||| ||||  |||||| ||||||| || ||||||| ||| ||||||| || || |||||||||| || ||||    
T  34199 tgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata-tttttta 34297  T
Q  183 aaggatgtgccatgtaatacattctaattg 212  Q
    |||| |||| || || | ||||||||||||    
T  34298 aagggtgtgtcacgtgacacattctaattg 34327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 23240 - 23089
Alignment:
Q  108 atatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgtaatacattct 207  Q
    |||||||||||  |||||| ||||||| || ||||||| ||| ||||||| || || |||||||||| || || |||||||  |||| || | | |  ||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatattttttaaaaggatacgccacgtgacagaccct 23141  T
Q  208 aattgaccaattatatataacatgagtaccttaatgatacgcaagtgttatc 259  Q
    ||||| |||||  |||||| |||  ||||||||||||||| |||||||||||    
T  23140 aattggccaatagtatataccattggtaccttaatgatacacaagtgttatc 23089  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 11215 - 11334
Alignment:
Q  98 taccaatgttatatatcattgatcaattaaagtgtgctacataccaatgttattttataagtacttcatttgatatagttatttaaaggatgtgccatgt 197  Q
    |||||||| ||||||||||||| || ||| ||| | | || ||||||||||| ||||||| |  || ||||||||||  | |||||||| ||||||| ||    
T  11215 taccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacatttttaaagggtgtgccacgt 11313  T
Q  198 aatacattctaattgaccaat 218  Q
     | ||||||||| ||| ||||    
T  11314 gacacattctaactgagcaat 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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