View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7084_low_8 (Length: 267)
Name: NF7084_low_8
Description: NF7084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7084_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 37623959 - 37623798
Alignment:
| Q |
48 |
tatggttatgatttgattttactcttatttatccatctatattttnnnnnnnnctaacattacttgaacggaatataacttaagtttcttaagcaatgtc |
147 |
Q |
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| T |
37623959 |
tatggttatgatttgattttactcttatttatccatctatattttaagaaaa-ctaacattacttgaacggaatataacttaagttccttaagcaatgtc |
37623861 |
T |
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| Q |
148 |
ttggatttaaagtttggtgaatgnnnnnnntgttgaggaaataaaacatttcataaagttttt |
210 |
Q |
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| T |
37623860 |
ttggatttaaagtttggtgaatgaaaaaaatgttgaggaaataaaacatttcataaagttttt |
37623798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 37623564 - 37623451
Alignment:
| Q |
141 |
caatgtcttggatttaaagtttggtgaatgnnnnnnntgttgaggaaataaaacatttcataaagtttttattgaaaattagtcatcaacaaatcgatga |
240 |
Q |
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| T |
37623564 |
caatgtcttggatt--aagtttggtgaatgaaaaaaatgttgaggaaataaaacatttcacaaagtttttattgaaaattagtcatcaacaaatcgatga |
37623467 |
T |
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| Q |
241 |
atatttcacagtaaca |
256 |
Q |
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| T |
37623466 |
atatttcacagtaaca |
37623451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 37623622 - 37623586
Alignment:
| Q |
30 |
tacaatatatttctttcatatggttatgatttgattt |
66 |
Q |
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| T |
37623622 |
tacattatatttctttcatatggttatgatttgattt |
37623586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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