View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7086_high_3 (Length: 251)

Name: NF7086_high_3
Description: NF7086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7086_high_3
NF7086_high_3
[»] chr4 (2 HSPs)
chr4 (19-241)||(9498860-9499082)
chr4 (161-208)||(56201173-56201220)
[»] chr7 (5 HSPs)
chr7 (93-234)||(18846185-18846325)
chr7 (93-234)||(15660280-15660420)
chr7 (45-202)||(47790300-47790458)
chr7 (157-237)||(36692251-36692331)
chr7 (45-143)||(15660179-15660278)
[»] chr1 (6 HSPs)
chr1 (93-233)||(34624211-34624350)
chr1 (97-241)||(29403624-29403769)
chr1 (97-233)||(20039505-20039641)
chr1 (73-143)||(29403830-29403900)
chr1 (75-143)||(20039431-20039499)
chr1 (200-231)||(11375456-11375487)
[»] chr8 (4 HSPs)
chr8 (93-234)||(20293201-20293343)
chr8 (93-234)||(21079832-21079974)
chr8 (97-234)||(13955753-13955888)
chr8 (103-224)||(2108287-2108409)
[»] chr6 (4 HSPs)
chr6 (102-223)||(29355339-29355460)
chr6 (95-234)||(19058850-19058986)
chr6 (173-238)||(7492158-7492223)
chr6 (73-143)||(19058990-19059060)
[»] chr2 (2 HSPs)
chr2 (121-233)||(23218993-23219105)
chr2 (174-237)||(44672756-44672821)
[»] chr3 (1 HSPs)
chr3 (97-169)||(28914400-28914472)
[»] scaffold0692 (1 HSPs)
scaffold0692 (161-208)||(5006-5053)
[»] chr5 (1 HSPs)
chr5 (200-228)||(43575459-43575487)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 9498860 - 9499082
Alignment:
19 gtgttttcccaaacaagcacagcttatagaagctgtgggaatacaaaagatagtatatttactggaatctaggaagaatttcagttatataagagtggga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
9498860 gtgttttcccaaacaagcacagcttatagaagctgtgggaatacaaaagatagtatatttactggaatctaggaagaatttcagttatataagagaggga 9498959  T
119 agcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaact 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9498960 agcctagagggtgagacattaagaaagtttgttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaact 9499059  T
219 ctggtttatcctttcatttcagt 241  Q
    |||||||||||||||||||||||    
9499060 ctggtttatcctttcatttcagt 9499082  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 56201173 - 56201220
Alignment:
161 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 208  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
56201173 ttaggagagatgttctctctggtctaggagcctagctctggtaggagt 56201220  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 18846325 - 18846185
Alignment:
93 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 192  Q
    ||||||||||||||| ||||| ||| || ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
18846325 agaatttcagttataaaagaggggggagtctagagg-taaggcattcagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 18846227  T
193 tagctctggtaggagttctctgaactctggtttatcctttca 234  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
18846226 tagctctggtaggagttctcagaactctggtttatcttttca 18846185  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 15660280 - 15660420
Alignment:
93 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 192  Q
    |||||||| |||||| ||||| ||| || ||||||  | || |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
15660280 agaatttccgttataaaagaggggggagtctagaga-taaggcattcagaaagtttgttaagagttgtttaggagagaagttctttctggtctaggagct 15660378  T
193 tagctctggtaggagttctctgaactctggtttatcctttca 234  Q
    |||||||||||||||||||||||||||||||||||| |||||    
15660379 tagctctggtaggagttctctgaactctggtttatcttttca 15660420  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 47790458 - 47790300
Alignment:
45 tagaagctgtgggaatacaaa-agatagtatatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 143  Q
    ||||||||||||||| ||||| |  ||| ||| ||| ||||||| ||||||||||||||||||  || || ||||| ||||||||||||  || | ||||    
47790458 tagaagctgtgggaacacaaacatttagaataattattggaatcaaggaagaatttcagttattaaacagagggaatcctagagggtgaagcagtcagaa 47790359  T
144 agttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggt 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
47790358 agtttcttaagagttgtttaggagagaagttctctctggtctaggagcttaactctggt 47790300  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 36692251 - 36692331
Alignment:
157 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcattt 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||   ||||||||||    
36692251 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattt 36692331  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 15660179 - 15660278
Alignment:
45 tagaagctgtgggaatacaaa-agatagtatatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 143  Q
    ||||||||||||||||||||| || ||  ||| ||| |||||| |||| |||||| |||||||  ||||| |||||||||||||||| || |||||||||    
15660179 tagaagctgtgggaatacaaacagttataataattattggaatttaggcagaattgcagttattgaagagagggaagcctagagggtcagtcattaagaa 15660278  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 34624350 - 34624211
Alignment:
93 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 192  Q
    ||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||    
34624350 agaattttagttataaaagagagggaagcctagagggtgaggcattaagaaagtttgt-aagagttgtttaggagaaaagttgtctctggtctaggagct 34624252  T
193 tagctctggtaggagttctctgaactctggtttatcctttc 233  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
34624251 tagctctggtaggagttctctgaactatggttaatcatttc 34624211  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 29403769 - 29403624
Alignment:
97 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 196  Q
    ||||||||||| ||||  |||||| |||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||    
29403769 tttcagttataaaagatagggaagtctagagggtgattcattcagaaagtttattaagagttgtttaggagagaagttctctctggtcttggagcttggc 29403670  T
197 tctggtaggagttctctgaactctggtttatccttt-catttcagt 241  Q
    || ||||| |||||||||||| |||||||||| ||| |||||||||    
29403669 tcgggtagaagttctctgaaccctggtttatcatttccatttcagt 29403624  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 20039505 - 20039641
Alignment:
97 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 196  Q
    ||||||||||| ||||| | ||||||||||||||||  |||  ||||| |||  |||||||||| ||||||||||||||| |||||||||||||||||||    
20039505 tttcagttataaaagagagagaagcctagagggtgatgcatacagaaaatttagtaagagttgtctaggagagaagttctttctggtctaggagcttagc 20039604  T
197 tctggtaggagttctctgaactctggtttatcctttc 233  Q
    ||||||||||||||||| |||||||||||||| ||||    
20039605 tctggtaggagttctctaaactctggtttatcatttc 20039641  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 29403900 - 29403830
Alignment:
73 atatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 143  Q
    ||||||| ||||||||||||||| ||||||||||  ||||| ||||||||| |||||| || |||||||||    
29403900 atatttattggaatctaggaagagtttcagttattaaagagagggaagccttgagggttagtcattaagaa 29403830  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 20039431 - 20039499
Alignment:
75 atttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 143  Q
    ||||| ||||||||||||||| ||||||||||  |||||  ||||||||||||||| || |||||||||    
20039431 atttattggaatctaggaagagtttcagttattcaagagaaggaagcctagagggttagtcattaagaa 20039499  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 11375487 - 11375456
Alignment:
200 ggtaggagttctctgaactctggtttatcctt 231  Q
    ||||||||||||||||||||||||||||||||    
11375487 ggtaggagttctctgaactctggtttatcctt 11375456  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 20293343 - 20293201
Alignment:
93 agaatttcagttatataagagtgggaagcc-tagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 191  Q
    ||||||||||||||| | ||| || ||||| ||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||| || |||||||    
20293343 agaatttcagttatagaggagaggaaagccctagagggggaggcattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagc 20293244  T
192 ttagctctggtaggagttctctgaactctggtttatcctttca 234  Q
    |||||||||||||||||||||||||||||||||||||||||||    
20293243 ttagctctggtaggagttctctgaactctggtttatcctttca 20293201  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 21079974 - 21079832
Alignment:
93 agaatttcagttatataagagtgggaagcc-tagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 191  Q
    ||||||||||||||| | ||| || ||||| ||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||| || |||||||    
21079974 agaatttcagttatagaggagaggaaagccctagagggggaggcattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagc 21079875  T
192 ttagctctggtaggagttctctgaactctggtttatcctttca 234  Q
    |||||||||||||||||||||||||||||||||||||||||||    
21079874 ttagctctggtaggagttctctgaactctggtttatcctttca 21079832  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 13955888 - 13955753
Alignment:
97 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 196  Q
    ||||||||||| ||||| ||| || ||||||| | || |||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
13955888 tttcagttataaaagaggggggagtctagagg-taaggcattcagaaagttgct-aagagttgtttaggagagaagttctctctggtctaggagcttagc 13955791  T
197 tctggtaggagttctctgaactctggtttatcctttca 234  Q
    |||||||||||||||||||||||||||| |||||||||    
13955790 tctggtaggagttctctgaactctggttaatcctttca 13955753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 2108409 - 2108287
Alignment:
103 ttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg- 201  Q
    ||||| ||||| ||||||||||| | ||||| ||||  |||||| |||||||||||  ||||||||||| || |||||||||||||||| |||||||||     
2108409 ttatagaagagagggaagcctagtgagtgagtcattgggaaagtattttaagagtttgttaggagagaaattttctctggtctaggagcctagctctggt 2108310  T
202 taggagttctctgaactctggtt 224  Q
    |||||||||   |||||||||||    
2108309 taggagttcatagaactctggtt 2108287  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 29355460 - 29355339
Alignment:
102 gttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg 201  Q
    |||||| ||||| || |||||||||| || || |||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
29355460 gttataaaagagaggaaagcctagagagtaaggcattcataaagtttgttaagagttgtttaggagagaagttctatctggtctaggagcttagctctgg 29355361  T
202 taggagttctctgaactctggt 223  Q
    |||||||||||||| |||||||    
29355360 taggagttctctgagctctggt 29355339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 234
Target Start/End: Complemental strand, 19058986 - 19058850
Alignment:
95 aatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagctta 194  Q
    ||||||||||| | |||||  |||||||||||||||||  | ||||| |||||| ||||||||||||||||||| ||||   ||||||||||||||| ||    
19058986 aatttcagttaaaaaagagacggaagcctagagggtgaatcgttaaggaagtttgttaagagttgtttaggagataagt---ctctggtctaggagccta 19058890  T
195 gctctggtaggagttctctgaactctggtttatcctttca 234  Q
    |||||||||||||||||||   ||||||||||||||||||    
19058889 gctctggtaggagttctcttccctctggtttatcctttca 19058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 7492158 - 7492223
Alignment:
173 ttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttc 238  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||||| |||| ||||    
7492158 ttctctctggtctacgagcttagctctggtaggtattctctgaattctagtttatcttttcgtttc 7492223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 19059060 - 19058990
Alignment:
73 atatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 143  Q
    ||||| ||||||||||||||||||||||||||||  |||||  |||| |||||||||  || |||||||||    
19059060 atattcactggaatctaggaagaatttcagttattaaagagaaggaatcctagagggctagtcattaagaa 19058990  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 23219105 - 23218993
Alignment:
121 cctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactct 220  Q
    |||||||  |||| |||| ||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
23219105 cctagagaatgaggcattcagaaagtttgtcatgagttgtttaggagagaagttctctctgatctaggagcttagctctggtaggagttctctgaactct 23219006  T
221 ggtttatcctttc 233  Q
    |||||||| ||||    
23219005 ggtttatcatttc 23218993  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 44672821 - 44672756
Alignment:
174 tctctctggtctaggagcttagctctgg-taggagttctctgaactctggtttatc-ctttcattt 237  Q
    |||||||||||||||||| ||||||||| |||||||||   ||||||||||||||| |||||||||    
44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtttatctctttcattt 44672756  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 28914472 - 28914400
Alignment:
97 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagag 169  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||| ||| |||||| ||||||| |||||    
28914472 tttcagttatataagagagggaagcctagagggtgattcattcagaaactttattaagaattgtttaagagag 28914400  T

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Target: scaffold0692 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 5053 - 5006
Alignment:
161 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 208  Q
    |||| ||||| ||||||||| |||||||||| ||||||||||||||||    
5053 ttagcagagatgttctctctagtctaggagcctagctctggtaggagt 5006  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 43575459 - 43575487
Alignment:
200 ggtaggagttctctgaactctggtttatc 228  Q
    |||||||||||||||||||||||||||||    
43575459 ggtaggagttctctgaactctggtttatc 43575487  T

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