View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7086_low_1 (Length: 324)
Name: NF7086_low_1
Description: NF7086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7086_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 25356663 - 25356391
Alignment:
| Q |
19 |
atcataattttcatgtttcattttaatagttgtaacatagtatcatggagttttagaagtgaccttgtgtcnnnnnnnnttaattaaagagaattgttta |
118 |
Q |
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| T |
25356663 |
atcataattttcatgtttcattttaatagttgtaacatagtatcatggagttttagaagtgaccttgtgtcaaaaaaa-ttaattaaagagaattgttta |
25356565 |
T |
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| Q |
119 |
gcttggaagagttcataatggattctgacattatagtttttaaatatctatgtataggtactacgacgtcaagcacagaatcgcgcggctgctcgaaaat |
218 |
Q |
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| T |
25356564 |
gcttggaagagttcataatggattctgacattatattttttaaatatctatgtataggtactacgacgtcaagcacagaatcgcgcagctgctcgaaaat |
25356465 |
T |
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| Q |
219 |
gtcggctgcggaaaaaggttgtaaaaattaaatttatatgaaggaagttacttgtgtttatgatctaatttgta |
292 |
Q |
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|||||||||| || |||||||||| || | | |||||| ||||||||||||| ||||||||||||| ||||||| |
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| T |
25356464 |
gtcggctgcgaaagaaggttgtaagaactgagtttataggaaggaagttactagtgtttatgatcttatttgta |
25356391 |
T |
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