View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7086_low_2 (Length: 316)
Name: NF7086_low_2
Description: NF7086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7086_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 40289312 - 40289601
Alignment:
| Q |
13 |
atactcaaatgaaagaaatgaatatgagcttttattttggaatgcaaaaataacctttcttcctttttcaacatagtaatattgggtttataataggcaa |
112 |
Q |
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| T |
40289312 |
atactcaaatggaagaaatgaatatgagcttttattttggaatgcaaaaataacctttcttcctttttcaacatagtaatattgggtttataataggcaa |
40289411 |
T |
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| Q |
113 |
gccaattgagtagctcataaccatgttagggcagcttgatcatagtcatgctcatgcgtttgcaatcatatttctacttgtattttgatgtttattgaga |
212 |
Q |
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| T |
40289412 |
gccaattgagtagctcataaccatgttagggcagcttgatcatagtcatgctcatgcgtttgcaatcatatttctacttgtattttgatgtttattgaga |
40289511 |
T |
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| Q |
213 |
atgaaatgaaattgatactttccttaaaaagaaaacttggccctaaaaaatatgaaccctaatcagtcactgaattttgggtcccaattg |
302 |
Q |
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| T |
40289512 |
atgaaatgaaattgatactttccttaaaaagaaaacttggccctaaaaaatatgaaccctaatcagtcactgaattttgggtcccaattg |
40289601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 35356818 - 35356717
Alignment:
| Q |
44 |
ttattttggaatgcaaaaataacctttcttcctttttcaacatagtaatattgggtttat-aataggcaagccaattgagtagctcataaccatgttagg |
142 |
Q |
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|||||||| |||| ||||||||| | ||||| |||||||||||| |||| ||| || | | || |||||| ||||| |||| |||||||||| ||||||| |
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| T |
35356818 |
ttattttgaaatgtaaaaataacatatcttcttttttcaacatattaatgttgtgtatctaaagaggcaacccaatggagttgctcataaccttgttagg |
35356719 |
T |
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| Q |
143 |
gc |
144 |
Q |
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| T |
35356718 |
gc |
35356717 |
T |
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