View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7087_high_2 (Length: 366)
Name: NF7087_high_2
Description: NF7087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7087_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 30576361 - 30576021
Alignment:
| Q |
10 |
aatattgttcacacttcacacattcttgattctggttcttgccaattacaaagtttggtgaattgttattttcattactatagcttcaatgtaatagtcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30576361 |
aatattgttcacacttcacacattcttgattctggttcttgccaattacaaagtttgctgaattgttattttcattactatagcttcaatgtaatagtcc |
30576262 |
T |
|
| Q |
110 |
tcctcatccctcttgtatataaatttaatgtaatgctgatccattaatcaatggttctttcttcaatataattgttctccttcctctgtattatctcccg |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30576261 |
tcctcatccatcttgtatataaatttaatgtaatgctgatccattaatcaatggttctttcttcaatataattgttctccttcctctgtattatctcccg |
30576162 |
T |
|
| Q |
210 |
tcgatattatggaagaaaccaaccactacgacaacaaagtcattcattctcggcaagcacagattcggaccagatctgtatgtcgtggttgggaaagttt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30576161 |
tcgatattatggaagaaaccaaccactacgacaacaaagtcattcattctcggcaagcacagattcggaccagatctgtatgtcgcagttgggaaagttt |
30576062 |
T |
|
| Q |
310 |
ttcctttcatatgactctatcaaaaatgtacaatgtggttg |
350 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30576061 |
ttcctttcatatggctctatcaaaaatgtacaatgcggttg |
30576021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University