View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7087_low_1 (Length: 408)
Name: NF7087_low_1
Description: NF7087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7087_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 36149782 - 36150169
Alignment:
| Q |
17 |
gttataacctctatttgataacacattatactaaaatatggtatcacatcaattcatgacaaaacaaatcaacaccctaattgaaatgtagctgaaaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149782 |
gttataacctctatttgataacacattatactaaaacatggtatcacatcaattcatgacaaaacaaatcaacaccctaattgaaatgtagctgaaaaat |
36149881 |
T |
|
| Q |
117 |
cttcgagtgaaaaagaactaacccacgaagagttctccagaaaatctttgaaggagccctaaaatgaataggaccatgactgggtttggtattcatcctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149882 |
cttcgagtgaaaaagaactaacccacgaagagttctccagaaaatctttgaaggagccctaaaatgaataggaccatgactgggtttggtattcatcctc |
36149981 |
T |
|
| Q |
217 |
ttcctaagaaacctcatgtacttcattttctgcctaacgagtccacctgacatacaaatctcttcacatcttacaaccacaactttctgtccgtttagga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149982 |
ttcctaagaaacctcatgtacttcattttctgcctaacgagtccacctgacatacaaatctcttcacatcttacaaccacaactttctgtccgtttagga |
36150081 |
T |
|
| Q |
317 |
gctcttttgcgacaatcgacgctaaacgacctagcatgtggtggcgagcgtcaatgacgactctctttgcacatgcaccggaacctga |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36150082 |
gctcttttgcgacaatcgacgctaaacgacctagcatgtggtggcgagcgtcaatgacgactctctttgcacatgctccggaacctga |
36150169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 386
Target Start/End: Complemental strand, 7575068 - 7574819
Alignment:
| Q |
137 |
acccacgaagagttctccagaaaatctttgaaggagccctaaaatgaataggaccatgactgggtttggtattcatcctcttcctaagaaacctcatgta |
236 |
Q |
| |
|
||||||||| ||| | ||| || ||||| || ||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| || |
|
|
| T |
7575068 |
acccacgaacagtgcgccaaaagatcttagagggagccctaaagtgaataggaccatgagaaggtttagtattcatcctcttccttagaaatctcatata |
7574969 |
T |
|
| Q |
237 |
cttcattttctgcctaacgagtccacctgacatacaaatctcttcacatcttacaaccacaactttctgtccgtttaggagctcttttgcgacaatcgac |
336 |
Q |
| |
|
|||||| ||||| ||||| || |||||||| |||||| ||||||||||| |||| ||||| ||||| || || || ||||| ||||||||||| || |
|
|
| T |
7574968 |
cttcatcttctgtctaacaagaccacctgaagcacaaatttcttcacatctaacaagaacaaccttctgaccattgagcagctcctttgcgacaatggag |
7574869 |
T |
|
| Q |
337 |
gctaaacgacctagcatgtggtggcgagcgtcaatgacgactctctttgc |
386 |
Q |
| |
|
|| | ||| || |||||||||||||| || || || |||||||||||||| |
|
|
| T |
7574868 |
gcaagacggccgagcatgtggtggcgggcatcgatcacgactctctttgc |
7574819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 169 - 359
Target Start/End: Original strand, 20903697 - 20903887
Alignment:
| Q |
169 |
ggagccctaaaatgaataggaccatgactgggtttggtattcatcctcttcctaagaaacctcatgtacttcattttctgcctaacgagtccacctgaca |
268 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| || |
|
|
| T |
20903697 |
ggagccctaaaatgaataggaccatgagaaggtttggtgttcatcctcttcctaagaaatctcatatacttcatcttctgcctaacaagaccaccagaag |
20903796 |
T |
|
| Q |
269 |
tacaaatctcttcacatcttacaaccacaactttctgtccgtttaggagctcttttgcgacaatcgacgctaaacgacctagcatgtggtg |
359 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||| || || || ||||| ||||| || || || || | | ||||||||||||||| |
|
|
| T |
20903797 |
cacaaatctcttcacatctaacaagaacaaccttctgaccattcagaagctcctttgcaacgatggaggcaagtctacctagcatgtggtg |
20903887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 292939 - 292996
Alignment:
| Q |
241 |
attttctgcctaacgagtccacctgacatacaaatctcttcacatcttacaaccacaa |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
292939 |
attttctgcctaacgagtccacgagacatgcaaatctcttcacatctcacaaccacaa |
292996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University