View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7087_low_3 (Length: 275)

Name: NF7087_low_3
Description: NF7087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7087_low_3
NF7087_low_3
[»] chr5 (4 HSPs)
chr5 (13-190)||(36150382-36150558)
chr5 (88-192)||(31529414-31529518)
chr5 (134-192)||(32843742-32843800)
chr5 (247-275)||(36150302-36150330)
[»] chr7 (2 HSPs)
chr7 (16-192)||(26449271-26449446)
chr7 (126-192)||(29465232-29465298)
[»] chr3 (4 HSPs)
chr3 (88-192)||(16893324-16893428)
chr3 (90-192)||(24347376-24347478)
chr3 (16-88)||(16893217-16893289)
chr3 (29-88)||(24347280-24347339)
[»] chr1 (6 HSPs)
chr1 (90-192)||(34565961-34566063)
chr1 (14-86)||(34566102-34566174)
chr1 (121-192)||(49491558-49491629)
chr1 (16-88)||(49491688-49491760)
chr1 (121-191)||(50903193-50903263)
chr1 (16-88)||(50903288-50903357)
[»] scaffold0753 (1 HSPs)
scaffold0753 (39-86)||(5280-5327)
[»] chr4 (2 HSPs)
chr4 (126-192)||(9241777-9241843)
chr4 (16-86)||(9241674-9241745)
[»] chr2 (2 HSPs)
chr2 (91-192)||(8413586-8413687)
chr2 (18-64)||(8413749-8413795)
[»] chr8 (1 HSPs)
chr8 (40-88)||(43113472-43113520)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 36150558 - 36150382
Alignment:
Q  13 tttggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcatctgtgatgtaatgttttgctcctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  36150558 tttggtgtttagctagtagcttctgtcatttctctgttgttgttgttttagcagttgctttgttagtttaattcatctgtgatgtaatgttttgctcctt 36150459  T
Q  113 ctattttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttg 190  Q
    || |||  |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  36150458 ctttttgttttgttgtaagcacttttgttgttaagggttctggccctctccagatcttttattgaattt-tttgcttg 36150382  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 31529518 - 31529414
Alignment:
Q  88 tctgtgatgtaatgttttgctccttctattttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgc 187  Q
    |||||| ||||||||||||||||||||  ||  |||| ||||| |||||||||||||||| |||||| | |||||||| |||||||| || |||||||||    
T  31529518 tctgtgttgtaatgttttgctccttcttcttgttttgatgtaagcacttttgttgttaagggttctggctctctccaggtcttttatagattttctttgc 31529419  T
Q  188 ttgat 192  Q
    |||||    
T  31529418 ttgat 31529414  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 32843742 - 32843800
Alignment:
Q  134 cttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttgat 192  Q
    |||||||||||||| |||||| |||| || || |||||||| | |||||||||||||||    
T  32843742 cttttgttgttaagggttctggccctttcgaggtcttttatagcatttctttgcttgat 32843800  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 36150330 - 36150302
Alignment:
Q  247 gcagcccattaagaaaacgggctaacgga 275  Q
    |||||||||||||||||||||||||||||    
T  36150330 gcagcccattaagaaaacgggctaacgga 36150302  T

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Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 26449446 - 26449271
Alignment:
Q  16 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcatctgtgatgtaatgttttgctccttcta 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||     
T  26449446 ggtgtttagctagtagcttctgtcatttctctattgttgttcttttaacagttgctttgttagtttaattcatctgtgatgtaatgttttgctccttctt 26449347  T
Q  116 ttttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttgat 192  Q
    ||   |||||||||| |||||||||||||||| |||||| || ||| ||  | ||||||||||||||||||||||||    
T  26449346 ttaattttgttgtaagcacttttgttgttaagggttctg-ccttctacaagtgttttattgaatttctttgcttgat 26449271  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 29465298 - 29465232
Alignment:
Q  126 tgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttgat 192  Q
    ||||| |||||||||||||||| |||||  |||||||||| |||||||| | |||||||||||||||    
T  29465298 tgtaagcacttttgttgttaagggttctagccctctccaggtcttttatagtatttctttgcttgat 29465232  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 16893324 - 16893428
Alignment:
Q  88 tctgtgatgtaatgttttgctccttctattttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgc 187  Q
    |||||||| ||||||||||| |||||| |||  |||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| | ||||||||||    
T  16893324 tctgtgatataatgttttgcaccttctttttgttttgatgtaagcacttttgttgttaagagttctggccctctccaggtcttttatagtatttctttgc 16893423  T
Q  188 ttgat 192  Q
    |||||    
T  16893424 ttgat 16893428  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 24347376 - 24347478
Alignment:
Q  90 tgtgatgtaatgttttgctccttctattttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgctt 189  Q
    |||||||||||||||||| || | | |||  |||| ||||| |||||||||||||||| |||  | ||||||||||||||||||| |||||| |||||||    
T  24347376 tgtgatgtaatgttttgcaccatttttttgttttgatgtaatcacttttgttgttaagggtttcggccctctccagatcttttatagaatttatttgctt 24347475  T
Q  190 gat 192  Q
    |||    
T  24347476 gat 24347478  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 16893217 - 16893289
Alignment:
Q  16 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 88  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||  || | ||||||||||| |||||    
T  16893217 ggtgttaagctagtagcttctgccatttctctgttgttcttcttttagcagtttcattgttagtttatttcat 16893289  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 24347280 - 24347339
Alignment:
Q  29 tagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 88  Q
    ||||||||  |||||  |||||||||||||||||||  ||||||||||||||||||||||    
T  24347280 tagcttctaccattttcctgttgttgttcttttagcggttgctttgttagtttaattcat 24347339  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 34566063 - 34565961
Alignment:
Q  90 tgtgatgtaatgttttgctccttctattttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgctt 189  Q
    |||||||||||||||||| | |||| |||  |||||||||| ||||||||||| |||| |||||| |||||||||| ||||| || |||||| |||||||    
T  34566063 tgtgatgtaatgttttgcacattctttttgttttgttgtaagcacttttgttgctaagggttctggccctctccaggtctttaatagaatttttttgctt 34565964  T
Q  190 gat 192  Q
    |||    
T  34565963 gat 34565961  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 34566174 - 34566102
Alignment:
Q  14 ttggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattc 86  Q
    ||||||||||| ||||||||| |||||||||| || ||||||||||||| |  ||||||||||||||||||||    
T  34566174 ttggtgtttagatagtagcttatgtcatttctttggtgttgttcttttatcagttgctttgttagtttaattc 34566102  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 49491629 - 49491558
Alignment:
Q  121 tttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttgat 192  Q
    |||| ||||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||| ||||||    
T  49491629 tttgatgtaagcacttttgctgttaagggttctgaccctctccaggtcttttatagaatttctttacttgat 49491558  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 49491760 - 49491688
Alignment:
Q  16 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 88  Q
    |||||||||  ||||||||||| |||||| | |||||||||||||||||   |||||||||| ||||||||||    
T  49491760 ggtgtttagtcagtagcttctgccatttccccgttgttgttcttttagcagctgctttgttattttaattcat 49491688  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 50903263 - 50903193
Alignment:
Q  121 tttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttga 191  Q
    |||| ||||| |||||| ||||||||| |||||| | |||||||| |||||||| | ||||||||||||||    
T  50903263 tttgatgtaagcactttcgttgttaagggttctggctctctccaggtcttttatagtatttctttgcttga 50903193  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 50903357 - 50903288
Alignment:
Q  16 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 88  Q
    |||||||||||||||||||||| | |||||   ||||||||||||||||  ||| |||||||||||| |||||    
T  50903357 ggtgtttagctagtagcttctgccttttct---ttgttgttcttttagcagttgttttgttagtttatttcat 50903288  T

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Target: scaffold0753 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 5327 - 5280
Alignment:
Q  39 catttctctgttgttgttcttttagccattgctttgttagtttaattc 86  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  5327 catttccctgttgttgttcttttagcaattgctttgttagtttaattc 5280  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 9241777 - 9241843
Alignment:
Q  126 tgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttgat 192  Q
    ||||| ||||||| |||||||| |||||| |||||||||| |||||||| | |||||||||||||||    
T  9241777 tgtaagcacttttattgttaagggttctggccctctccaggtcttttatagtatttctttgcttgat 9241843  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 9241674 - 9241745
Alignment:
Q  16 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccatt--gctttgttagtttaattc 86  Q
    |||||||||||||||||||||  |||||| || ||||||||||||||||  ||  ||||||||||||| ||||    
T  9241674 ggtgtttagctagtagcttcttccatttccct-ttgttgttcttttagcagttgcgctttgttagttttattc 9241745  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 8413687 - 8413586
Alignment:
Q  91 gtgatgtaatgttttgctccttctattttgtttgttgtaaacacttttgttgttaagagttctgaccctctccagatcttttattgaatttctttgcttg 190  Q
    ||||| ||||||||||| |||||| |||  |||| ||||| |   |||||||||||| | |||| |||||||||| |||||||| | |||||||||||||    
T  8413687 gtgatataatgttttgcaccttctttttgttttgatgtaagcttctttgttgttaagggatctggccctctccaggtcttttatagtatttctttgcttg 8413588  T
Q  191 at 192  Q
    ||    
T  8413587 at 8413586  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 8413795 - 8413749
Alignment:
Q  18 tgtttagctagtagcttctgtcatttctctgttgttgttcttttagc 64  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  8413795 tgttaagctagtagcttctgccatttctctgttgttcttcttttagc 8413749  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 43113520 - 43113472
Alignment:
Q  40 atttctctgttgttgttcttttagccattgctttgttagtttaattcat 88  Q
    |||||| || ||||||||||||||| || | ||||||||||||||||||    
T  43113520 atttctttgatgttgttcttttagcaatagttttgttagtttaattcat 43113472  T

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