View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7087_low_4 (Length: 272)
Name: NF7087_low_4
Description: NF7087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7087_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 47550790 - 47551027
Alignment:
| Q |
23 |
tgagttatcagctgatgcatatgtgcctgtgcaagaaaatcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgaga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47550790 |
tgagttatcagctgatgcatatgtgcctgtgcaggaaaatcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgaga |
47550889 |
T |
|
| Q |
123 |
ggagacaataatgggttgggaggcattatttcttcagttgaaagtgtgcagaagaacaccgcagcaggatggaacaagataggaacaacaaattccctgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
47550890 |
ggagacaataatgggttgggaggcattatttcttcagttgaaagtgtgcagaagaacaccgcagcaggatcgaacaagatagaaacaacaaattccctgc |
47550989 |
T |
|
| Q |
223 |
cgcggcgggtggatagctttgatcatcaactggattctttt |
263 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47550990 |
c---gcgggtggatagctttgatcatcaactggattctttt |
47551027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 47528928 - 47529129
Alignment:
| Q |
19 |
cttctgagttatcagctgatgcatatgtgcctgtgcaagaaaatcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatat |
118 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||||||||| ||| ||||||| |||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
47528928 |
cttctgaatcatcagctgatgcatctgtgcctgtgcaagaagatccaaataatcacttttttcaacccttacctaatcatcttatgtccagtcatgatat |
47529027 |
T |
|
| Q |
119 |
gagaggagacaataatgggttgggaggcattatttcttcagttgaaagtgtgcagaagaacaccgcagcaggatggaacaagataggaacaacaaattcc |
218 |
Q |
| |
|
|||||||| ||||||| | | |||| ||||||||||||||| |||||||| || |||||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
47529028 |
gagaggagccaataatagatcgggaagcattatttcttcagctgaaagtgggc---agaacaccccagcaggtgggaacaagataggacgaacaaattcc |
47529124 |
T |
|
| Q |
219 |
ctgcc |
223 |
Q |
| |
|
||||| |
|
|
| T |
47529125 |
ctgcc |
47529129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University