View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7088_high_1 (Length: 688)

Name: NF7088_high_1
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7088_high_1
NF7088_high_1
[»] chr3 (1 HSPs)
chr3 (93-645)||(26391740-26392297)
[»] chr4 (3 HSPs)
chr4 (364-645)||(19317556-19317837)
chr4 (306-432)||(43990908-43991034)
chr4 (385-439)||(23061072-23061126)
[»] chr7 (2 HSPs)
chr7 (364-440)||(21116720-21116796)
chr7 (122-179)||(21117153-21117210)
[»] chr5 (4 HSPs)
chr5 (307-439)||(38944889-38945020)
chr5 (320-428)||(12716423-12716531)
chr5 (320-428)||(12777654-12777762)
chr5 (385-439)||(30303195-30303249)
[»] chr1 (5 HSPs)
chr1 (362-441)||(9788970-9789049)
chr1 (366-457)||(27876010-27876101)
chr1 (356-439)||(15230925-15231008)
chr1 (370-413)||(39285226-39285269)
chr1 (384-437)||(30653956-30654009)
[»] chr2 (2 HSPs)
chr2 (385-439)||(28591683-28591737)
chr2 (544-622)||(29381603-29381680)
[»] chr8 (2 HSPs)
chr8 (385-439)||(26953170-26953224)
chr8 (366-439)||(21278057-21278130)
[»] chr6 (3 HSPs)
chr6 (366-439)||(32894346-32894419)
chr6 (120-180)||(4511230-4511290)
chr6 (373-417)||(6769513-6769557)


Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 93 - 645
Target Start/End: Original strand, 26391740 - 26392297
Alignment:
Q  93 gaatattaacacctattctacatcaaacaccctgttggaccaccattttagtactaaaaatacttcgccgcacataacaaggattagcttaaagcctaga 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  26391740 gaatattaacacctattctacatcaaacaccctgttggaccaccattttagtactaaaaatacttcgccgcacataactaggattagctcaaagcctaga 26391839  T
Q  193 gctcaaaatattgccctgagga-----gtgcgccttatacaaatacttcacaagactagtattatctgtttgaaattttcatccgtgtttgccaagtatc 287  Q
    ||||||||||||||| |||| |     |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  26391840 gctcaaaatattgccttgagaaaaatagtgcaccttatacaaatgcttcacaagactagtattatctctttgaaattttcatccttgttttccaagtatc 26391939  T
Q  288 atcagatgaaaactcttcataagaaagaattgattggagtatcgatttgatcaccatttccctttcggctttacatagacatttgctactccaagaatta 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26391940 atcagatgaaaactcttcataagaaagaattgattggagtatcgatttgatcaccatttctctttcggctttagatagacatttgctactccaagaatta 26392039  T
Q  388 attttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttcggtcgatcatagatggcaaccccaaatactttacggtgctcatgacaa 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  26392040 attttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttcggccgatcatagatggaaaccccaaatactttacgatgctcatgacaa 26392139  T
Q  488 tgtgaacaccaagagtggaggtgatagaatcatgtatagggccagacacactacagctattataaacctcatatttaggaagactggttgcttggccata 587  Q
    || |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  26392140 tgcgaacaccaagagtggaggtgatagaatcgtgtacagggccagacacactacggctattataaacctcagatttaggaagactggttgcttggccata 26392239  T
Q  588 agctttctcgtaagtttcaagaatatgtttcatcacattcgcttctttttcctctgcc 645  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26392240 agctttctcgtaattttcaagaatatgtttcatcacattcgcttctttttcctctgcc 26392297  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 645
Target Start/End: Original strand, 19317556 - 19317837
Alignment:
Q  364 agacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttcggtcgatcatagatggcaacccca 463  Q
    ||||||||||| |||||  ||| |||||| ||||||||||| || || ||||||||||||||| | ||||||||| || |||||||| |||  |  || |    
T  19317556 agacatttgctgctccagaaatgaattttatgccaaatgcggtctttaataaatccaaaagtaacatctttactttggccgatcataaatgtaagtccta 19317655  T
Q  464 aatactttacggtgctcatgacaatgtgaacaccaagagtggaggtgatagaatcatgtatagggccagacacactacagctattataaacctcatattt 563  Q
     |||||||| |||||  || | | ||  | |||||||| | || |||||| |||| |||| | |||| |  ||||| | ||||| ||| || |   | ||    
T  19317656 gatactttatggtgcctattagagtgcaatcaccaagaattgaagtgataaaatcttgtacatggcctggaacactgcggctataatatactttggactt 19317755  T
Q  564 aggaagactggttgcttggccataagctttctcgtaagtttcaagaatatgtttcatcacattcgcttctttttcctctgcc 645  Q
    |||||||||| ||||||||||| |||||  ||| |||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  19317756 aggaagactgattgcttggccagaagctgcctcataagtttcaagaatgtgtttcatcacattcgcttctctttcatctgcc 19317837  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 432
Target Start/End: Original strand, 43990908 - 43991034
Alignment:
Q  306 ataagaaagaattgattggagtatcgatttgatcaccatttccctttcggctttacatagacatttgctactccaagaattaattttgtgccaaatgcga 405  Q
    ||||||| |||| || ||||||| |||||| |||| || ||| |||||||||||| | || || ||||| |||||| | || |||||||||||||||||     
T  43990908 ataagaaggaatagactggagtaccgatttcatcaacacttctctttcggctttagaaaggcacttgctgctccaacagtttattttgtgccaaatgcgg 43991007  T
Q  406 tccttgataaatccaaaagtagcttct 432  Q
    ||||| || || |||||||| ||||||    
T  43991008 tccttaatgaagccaaaagttgcttct 43991034  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 23061072 - 23061126
Alignment:
Q  385 ttaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    ||||||||||||||||| || ||||||||||| |||||||| || ||||||||||    
T  23061072 ttaattttgtgccaaatacggtccttgataaaaccaaaagtcgcctctttacttc 23061126  T

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Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 364 - 440
Target Start/End: Complemental strand, 21116796 - 21116720
Alignment:
Q  364 agacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttcg 440  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||| |||||    
T  21116796 agacatttgctactccaagaattgattttgtgccaaatacgatctttaataaatccgaaagtagcttctttgcttcg 21116720  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 21117210 - 21117153
Alignment:
Q  122 ccctgttggaccaccattttagtactaaaaatacttcgccgcacataacaaggattag 179  Q
    |||||||| || ||||||||||  ||||||||||| |||| |||||||| ||||||||    
T  21117210 ccctgttgaacaaccattttagcgctaaaaatactgcgccacacataactaggattag 21117153  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 307 - 439
Target Start/End: Complemental strand, 38945020 - 38944889
Alignment:
Q  307 taagaaagaattgattggagtatcgatttgatcaccatttccctttcggctttacatagacatttgctactccaagaattaattttgtgccaaatgcgat 406  Q
    ||||||||||| ||||| |||| |||||| |||| || ||| ||| |||||||| | || || ||||| ||||||||||| ||||||||||||||||  |    
T  38945020 taagaaagaatagattgaagtaccgatttaatcaacacttctcttccggctttagagaggcacttgctgctccaagaatt-attttgtgccaaatgctgt 38944922  T
Q  407 ccttgataaatccaaaagtagcttctttacttc 439  Q
    | ||||| || |||||||| |||||||| ||||    
T  38944921 ctttgatgaagccaaaagtcgcttctttgcttc 38944889  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 12716423 - 12716531
Alignment:
Q  320 attggagtatcgatttgatcaccatttccctttcggctttacatagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatcc 419  Q
    ||||||||| |||||||||||  | ||| ||| |||||||  ||||||| ||||| |||||  |||||||| |||||||||| |||||||| ||||| ||    
T  12716423 attggagtaccgatttgatcatgaattctcttccggctttggatagacacttgcttctccagaaattaattgtgtgccaaatacgatccttcataaagcc 12716522  T
Q  420 aaaagtagc 428  Q
    ||| |||||    
T  12716523 aaacgtagc 12716531  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 12777654 - 12777762
Alignment:
Q  320 attggagtatcgatttgatcaccatttccctttcggctttacatagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatcc 419  Q
    ||||||||| |||||||||||  | ||| ||| |||||||  ||||||| ||||| |||||  |||||||| |||||||||| |||||||| ||||| ||    
T  12777654 attggagtaccgatttgatcatgaattctcttccggctttggatagacacttgcttctccagaaattaattgtgtgccaaatacgatccttcataaagcc 12777753  T
Q  420 aaaagtagc 428  Q
    ||| |||||    
T  12777754 aaacgtagc 12777762  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 30303249 - 30303195
Alignment:
Q  385 ttaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    ||||||||||||||||| || ||||||||||| |||||||| || ||||||||||    
T  30303249 ttaattttgtgccaaatacggtccttgataaaaccaaaagtcgcctctttacttc 30303195  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 9788970 - 9789049
Alignment:
Q  362 atagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttcgg 441  Q
    ||||||| || |||||| |||  |||||||| |||||||| |||||||||||||| || ||||| ||||||| |||||||    
T  9788970 atagacagtttctactctaagtgttaattttatgccaaattcgatccttgataaaaccgaaagttgcttcttcacttcgg 9789049  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 457
Target Start/End: Complemental strand, 27876101 - 27876010
Alignment:
Q  366 acatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttcggtcgatcatagatggca 457  Q
    ||||||||| ||| ||  |||||||||||||||||| |||||||| ||||| ||||| || || |||||||||| | | | |||||||||||    
T  27876101 acatttgctgctcaaactattaattttgtgccaaatacgatcctttataaagccaaatgttgcctctttacttctgcccaccatagatggca 27876010  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 439
Target Start/End: Complemental strand, 15231008 - 15230925
Alignment:
Q  356 ctttacatagacatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    ||||| ||| ||| ||||| ||||||  ||| |||||||||||||| ||||| ||||||||||| || || || ||||||||||    
T  15231008 ctttaaataaacacttgctgctccaactattgattttgtgccaaatacgatctttgataaatccgaaggttgcctctttacttc 15230925  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 413
Target Start/End: Complemental strand, 39285269 - 39285226
Alignment:
Q  370 ttgctactccaagaattaattttgtgccaaatgcgatccttgat 413  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||    
T  39285269 ttgctactccaactattaattttgtgccaaatgagatccttgat 39285226  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 30653956 - 30654009
Alignment:
Q  384 attaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttact 437  Q
    |||||| |||||||| ||| ||||||||||||| |||||||| ||||| |||||    
T  30653956 attaatcttgtgccatatgtgatccttgataaagccaaaagttgcttccttact 30654009  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 28591683 - 28591737
Alignment:
Q  385 ttaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    ||||||||||||||||| || ||||||||||| |||||||| || ||||||||||    
T  28591683 ttaattttgtgccaaatacggtccttgataaaaccaaaagtcgcctctttacttc 28591737  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 622
Target Start/End: Complemental strand, 29381680 - 29381603
Alignment:
Q  544 ctattataaacctcatatttaggaagactggttgcttggccataagctttctcgtaagtttcaagaatatgtttcatca 622  Q
    |||| |||||| ||| ||||||| || ||  ||||||||| | |||||||||| |||||||||||||| ||||||||||    
T  29381680 ctataataaacttcagatttagggaggctaattgcttggc-agaagctttctcataagtttcaagaatgtgtttcatca 29381603  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 26953170 - 26953224
Alignment:
Q  385 ttaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    |||||||||||||||||  | ||||||||||| |||||||| || ||||||||||    
T  26953170 ttaattttgtgccaaatatggtccttgataaaaccaaaagtcgcctctttacttc 26953224  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 21278057 - 21278130
Alignment:
Q  366 acatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    ||||||||| ||||||  |||||||||||||||||| || ||||| |||||  |||| || || ||||||||||    
T  21278057 acatttgctgctccaactattaattttgtgccaaatacggtcctttataaagtcaaatgttgcctctttacttc 21278130  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 32894419 - 32894346
Alignment:
Q  366 acatttgctactccaagaattaattttgtgccaaatgcgatccttgataaatccaaaagtagcttctttacttc 439  Q
    |||||| || ||||||  |||||||||||||||||| || ||||| ||||| ||||| || || ||||||||||    
T  32894419 acatttactgctccaactattaattttgtgccaaatacggtcctttataaagccaaatgttgcctctttacttc 32894346  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 4511290 - 4511230
Alignment:
Q  120 caccctgttggaccaccattttagtactaaaaatacttcgccgcacataacaaggattagc 180  Q
    |||| ||||||||  | ||||||| |||||||||||| |||| |||||||| |||||||||    
T  4511290 caccatgttggacatctattttagcactaaaaatactacgccacacataactaggattagc 4511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 6769557 - 6769513
Alignment:
Q  373 ctactccaagaattaattttgtgccaaatgcgatccttgataaat 417  Q
    ||||||||||| |||||||||| |||||||||||| || ||||||    
T  6769557 ctactccaagagttaattttgttccaaatgcgatcttttataaat 6769513  T

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