View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_13 (Length: 347)
Name: NF7088_high_13
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 40002083 - 40002374
Alignment:
| Q |
1 |
tcattattcctcaaaaagacttttacccctaaaagttagtggttatgatctggattctagaagaaggtctttacatcaactaattaccgtggacgcaaag |
100 |
Q |
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| T |
40002083 |
tcattattcctcaaaaagacttttacccctgaaagttagtggttatgatctggattctagaagaaggtctttacatcaactaattaccgtgggcgcaaaa |
40002182 |
T |
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| Q |
101 |
ctgcatctgaaacgtaattaacatgaatggataagtaaagtttttctcactgga--------tggtaaaaacacaaattaataatataggtgaagatgcc |
192 |
Q |
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| T |
40002183 |
ctgcatctgaaacgtaatcaacatgaatggataagtgaagtttttctcactcgatgatgaactgataaaaacacaaactaataatataggtgaagatgcc |
40002282 |
T |
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| Q |
193 |
aacataacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagttaatgtcactttttggttaagtggtaaaac |
284 |
Q |
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| T |
40002283 |
aacataacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagttaatgtcactttttggttaagtggtaaaac |
40002374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 40003705 - 40003740
Alignment:
| Q |
280 |
aaaacaacaatccttagactcgaaagtcacaggttc |
315 |
Q |
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| T |
40003705 |
aaaacaacaatccttagactcgaaaatcacaggttc |
40003740 |
T |
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