View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_14 (Length: 307)
Name: NF7088_high_14
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 41539043 - 41538786
Alignment:
| Q |
16 |
ctgtgaatacaaggaacaaaacaagaacagggttaatatgaatcataccttgagcaccatctgaactacagtttcaacatcactatgaagaaacctgtga |
115 |
Q |
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| T |
41539043 |
ctgtgaatacaaggaacaaaacaagaacagggttaatatgaatcataccttgagcaccatctgaactacagtttcaacatcactatgaagaaacctgtga |
41538944 |
T |
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| Q |
116 |
gcaaatccaataaaatgcataaccagtgaagtataatacagataattagatagaacataatccacccaacgcggagaatatgcaccaccaccaccacttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41538943 |
gcaaatccaataaaatgcataaccagtgaagtataatacagataattagatagaacataatccacccaacgcggcgaatatgcaccaccaccaccacttc |
41538844 |
T |
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| Q |
216 |
caatttcagacacagcattttccattttttcaccgttcattgcatcaagctccgaaaa |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41538843 |
caatttcagacacagcattttccattttttcaccgttcattgcatcaagctctgaaaa |
41538786 |
T |
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