View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_19 (Length: 270)
Name: NF7088_high_19
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36283476 - 36283207
Alignment:
| Q |
1 |
caagatgatgaagctatttttgcatgcagtacttgaatggaacaaagaagaattagtaggaaccaatgtaaaatataatcaatcaaatatgtatgactta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36283476 |
caagttgatgaagctatttttgcatgcagtacttgaatggaacaaagaagaattagaaggaaccaatgtcaaatataatcaatcaaatatgtatgactta |
36283377 |
T |
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| Q |
101 |
tgtgcatattatatcatcacatataccacttcattaagtgtggaaaaagacagcaagaaaaacgcagtttgttttgttcataaaatccattatatcaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283376 |
tgtgcatattatatcatcacatataccacttcattaagtgtggaaaatgacagcaagaaaaacgcagtttgttttgttcataaaatccattatatcaaac |
36283277 |
T |
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| Q |
201 |
aatctccatgtggaatcgacggaagaagtctaaatcatttgattctttattagccttaggttagaataat |
270 |
Q |
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| T |
36283276 |
attctccatgtggaatcgacggaagaagtctaaatcatttgattctttattagccttaggttagaataat |
36283207 |
T |
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