View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_20 (Length: 263)
Name: NF7088_high_20
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 36283809 - 36283610
Alignment:
| Q |
17 |
agaaacagttacgatagagaggaagaactatagttttaggtgtacctctacataaagcaatgattatatttggataaacaaattaactaagcgcgcttaa |
116 |
Q |
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| T |
36283809 |
agaaacagttacgatagagaggaagaactatagttttaggtgtacctctacataaagcaatgattatatttggataaacaaattaactaagcgcgcttaa |
36283710 |
T |
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| Q |
117 |
agaaacgtttatgtattagttatttttgtaacaagataaaataaagtcaaaccggactcatataagccatcgtggagagtttattacatttcataagctt |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283709 |
agaaacgtttatgtataagttatttttgtaacaagataaaataaagtcaaaccggactcatataagccatcgtggagagtttattacatttcataagctt |
36283610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 36283597 - 36283560
Alignment:
| Q |
226 |
ctctccataaattctcctaatcagtctcataaatactt |
263 |
Q |
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| T |
36283597 |
ctctccataaattctcctaaagagtctcataaatactt |
36283560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 32920531 - 32920487
Alignment:
| Q |
123 |
gtttatgtattagttatttttgtaacaagataaaataaagtcaaa |
167 |
Q |
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| T |
32920531 |
gtttatggataagctatttttataacaagataaaataaagtcaaa |
32920487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 15360831 - 15360878
Alignment:
| Q |
123 |
gtttatgtattagttatttttgtaac--aagataaaataaagtcaaac |
168 |
Q |
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||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
15360831 |
gtttatgtattagttatttctataacaaaagataaaataaagtcaaac |
15360878 |
T |
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