View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_26 (Length: 234)
Name: NF7088_high_26
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48592075 - 48591860
Alignment:
| Q |
1 |
gtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagctgaaaaatgaa |
100 |
Q |
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| T |
48592075 |
gtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcaacttcttgtttctctttaagtaagagagaagctgaaaaatgaa |
48591976 |
T |
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| Q |
101 |
aagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaatgcacaattgagaagtgttgtgaatcaaactt |
200 |
Q |
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| T |
48591975 |
aagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcactttgaatgcacaattgagaagtgttgtgattcaaactt |
48591876 |
T |
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| Q |
201 |
atatgcatggcgttat |
216 |
Q |
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||||||||||| |||| |
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| T |
48591875 |
atatgcatggccttat |
48591860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48601770 - 48601555
Alignment:
| Q |
1 |
gtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagctgaaaaatgaa |
100 |
Q |
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| T |
48601770 |
gtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcaacttcttgtttctctttaagtaagagagaagctgaaaaatgaa |
48601671 |
T |
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| Q |
101 |
aagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaatgcacaattgagaagtgttgtgaatcaaactt |
200 |
Q |
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| T |
48601670 |
aagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcactttgaatgcacaattgagaagtgttgtgattcaaactt |
48601571 |
T |
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| Q |
201 |
atatgcatggcgttat |
216 |
Q |
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||||||||||| |||| |
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| T |
48601570 |
atatgcatggccttat |
48601555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 48597484 - 48597431
Alignment:
| Q |
163 |
tttgaatgcacaattgagaagtgttgtgaatcaaacttatatgcatggcgttat |
216 |
Q |
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| T |
48597484 |
tttgaatgcacaattgagaagtgttgtgaatcaaacttatatgcatggcgttat |
48597431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 23232257 - 23232421
Alignment:
| Q |
1 |
gtccaattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagctgaaaaatgaa |
100 |
Q |
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|||||||||||||||||| |||||||||||||||| ||| ||||| ||| || || |||||||||||||| ||| |||| ||| | | || ||| |
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| T |
23232257 |
gtccaattattggtattgttggtggacttggaggg--agg-ggtaaatgtggttgtgatttcttgtttctcttaaagacggagaaaagtgggagaaggaa |
23232353 |
T |
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| Q |
101 |
aagaaataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaa |
168 |
Q |
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||||| ||||||| ||||||||||||| |||||||||| |||||||| ||| |||||| | |||||| |
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| T |
23232354 |
aagaagaaggagcacaatcatagctaataagaaggaatgagaaatcatcttgttttattagctttgaa |
23232421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 23224926 - 23224964
Alignment:
| Q |
3 |
ccaattattggtattgctggtggacttggagggtgaggt |
41 |
Q |
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| T |
23224926 |
ccaattattggtattgctagtggacttggagggtaaggt |
23224964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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