View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_30 (Length: 215)
Name: NF7088_high_30
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 41538938 - 41538786
Alignment:
| Q |
29 |
tccaataatatgcataaccagtgaagtataatacagataattagatagaacataatccacccaacgcggagaatatgcaccaccaccaccacttccaatt |
128 |
Q |
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| T |
41538938 |
tccaataaaatgcataaccagtgaagtataatacagataattagatagaacataatccacccaacgcggcgaatatgcaccaccaccaccacttccaatt |
41538839 |
T |
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| Q |
129 |
tcagacacagcattttccattttttcaccgttcattgcatcaagctccgaaaa |
181 |
Q |
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| T |
41538838 |
tcagacacagcattttccattttttcaccgttcattgcatcaagctctgaaaa |
41538786 |
T |
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