View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_high_6 (Length: 450)
Name: NF7088_high_6
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_high_6 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 36335967 - 36335549
Alignment:
| Q |
19 |
gaaaagctgtagctgtgatagacttttgagtatgatgtacatatataggattgtggattactagtttccttcttttcaattaagcaactatgtgtaggct |
118 |
Q |
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| T |
36335967 |
gaaaagctgtagctgtgatagacttttgagtatgatgtacatatataggattgtggattactagtttccttcttttcaattaagcaactatgtgtaggct |
36335868 |
T |
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| Q |
119 |
gattatatcagctccatcttctgcaggtatattgtttggggcaccgaagttatattgagcataattgtacaaaacccaacaaacaagatgtcaccgttgt |
218 |
Q |
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| T |
36335867 |
gattatatcagctccatcttctgcaggtatattgtttggggcaccgaagttatattgagcataattgtacaaaacccaacaaacaagatgtcaccgttgt |
36335768 |
T |
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| Q |
219 |
tatatgtccactttgtgctaaaggggttcgcctaattccagaccaagatccaaacatagtttgggagcatcatgtcaacacagactgtgacccatcaaat |
318 |
Q |
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| T |
36335767 |
tatatgtccactttgtgctaaaggggttcgcctaattccagaccaagatccaaacatagtttgggagcatcatgtcaacacagactgtgatccatcaaat |
36335668 |
T |
|
| Q |
319 |
tatgaaaaagccacaaagaagaaaaagtgtcctgtcccaggatgcagagagaccttagtattctcaaacacaatcaagtgtagggactgtgaggttgacc |
418 |
Q |
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| T |
36335667 |
tatgaaaaagccacaaagaagaaaaagtgtcctgtcccaggatgcagagagaccttagtattctcaaacacaatcaagtgtagggactgtgaggttgacc |
36335568 |
T |
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| Q |
419 |
attgtttgaagcacaggtt |
437 |
Q |
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| T |
36335567 |
attgtttgaagcacaggtt |
36335549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 143 - 437
Target Start/End: Original strand, 40916 - 41210
Alignment:
| Q |
143 |
aggtatattgtttggggcaccgaagttatattgagcataattgtacaaaacccaacaaacaagatgtcaccgttgttatatgtccactttgtgctaaagg |
242 |
Q |
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|||| |||||||||| |||||||||||||| | ||| ||||||||| | |||| ||||||||||| || || |||||||||||||| |||||||| |
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| T |
40916 |
aggtgtattgtttggaacaccgaagttatatcaaacatcgctgtacaaaagctgacaagcaagatgtcactgtagtaatatgtccactttgcgctaaagg |
41015 |
T |
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| Q |
243 |
ggttcgcctaattccagaccaagatccaaacatagtttgggagcatcatgtcaacacagactgtgacccatcaaattatgaaaaagccacaaagaagaaa |
342 |
Q |
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| T |
41016 |
agtccgcctagttcctgagcaagatccaaacataacatgggagaatcatgttaacaccgactgcgacccatcaaattatgagaaagttacaaagaagaaa |
41115 |
T |
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| Q |
343 |
aagtgtcctgtcccaggatgcagagagaccttagtattctcaaacacaatcaagtgtagggactgtgaggttgaccattgtttgaagcacaggtt |
437 |
Q |
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| T |
41116 |
aaatgccctgcagctggatgcaaagagatcttagtattctcaaacacaattaaatgcaaggattgcacgatagaccattgtttgaagcataggtt |
41210 |
T |
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