View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_10 (Length: 382)
Name: NF7088_low_10
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 34 - 364
Target Start/End: Original strand, 44407978 - 44408308
Alignment:
| Q |
34 |
gtgttcaccgctctcggctcctcctacgttcatcgtttccctcacgttcacttcgacctccgttcacctcactcagtccgtcctcactgcaggtatttcc |
133 |
Q |
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| T |
44407978 |
gtgttcaccgctctcggctcctcctacgttcatcgtttccctcacgttcacttcgacctccgttcacctcactcagtccgtcctcactgcaggtatttcc |
44408077 |
T |
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| Q |
134 |
tttcctctgttttatgctttttaccttcacggtggtgcttactgagtcgccatcttgttctgcaaccttacatagcataactgattctatattttatact |
233 |
Q |
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| T |
44408078 |
tttcctctgttttatgctttttaccttcacggtggtgcttactgagtcaccatcttcttctgcaaccttacatagcataactgattctatattctatact |
44408177 |
T |
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| Q |
234 |
agttgaatgaaaatgcactatgcctgcattcgcaatacctaatgtttatttcctccataattactttgatcataagaatttaagaaaattatatatttgg |
333 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
44408178 |
agtagaatgaaaatgcactatgcctgcattcgcaatacctaatgtttatttcctccctaattactttgatcataagaatttaataaagttatatatttgg |
44408277 |
T |
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| Q |
334 |
aatggaaccacgtgtgttcgacagtaattcc |
364 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
44408278 |
aatagaaccacgtgtgttcgacagtaattcc |
44408308 |
T |
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