View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_11 (Length: 376)
Name: NF7088_low_11
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 30850037 - 30850372
Alignment:
| Q |
21 |
aagttaaacagtgtaggttttacaaaattatacaaatttggtgagtttgtgtcaaactcacattgatataaaataatcactatatatttaatttcagtta |
120 |
Q |
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| T |
30850037 |
aagttaaaaagtgtaggttttacaaaattatacaaatttggtgtgattttgtcaaactcacattgatataaaataatcactatatatttaatttcacat- |
30850135 |
T |
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| Q |
121 |
ataagataatagtgttatttatgtagtacataatttgtttaaagtttgtcataacaatcattattttacatgattggctatctatgttctacgactttgt |
220 |
Q |
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| T |
30850136 |
-tgatataaca--------tagatagtacataatttgtttaaagtttgtcataacaatcattattttacatgattggctatctatgttctacgactttgt |
30850226 |
T |
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| Q |
221 |
gtgatgaatcccttctagcaagattacacaccttgatgaaacaagacaaaggttaacctagattcaagattacatatcttgtgtaatgaatctctaacac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30850227 |
gtgatgaatcccttctagcaagattacacaccttgatgaaacaagacaaaggttaacctagattcaagattacatatcttgtgtaatgaatctctaacac |
30850326 |
T |
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| Q |
321 |
tagatcctccatgcatgaaggtgttagtgcactgattagagtataa |
366 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30850327 |
tagatccgccatgcatgaaggtgttagtgcactgattagagtataa |
30850372 |
T |
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