View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_17 (Length: 301)
Name: NF7088_low_17
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 40002107 - 40001830
Alignment:
| Q |
1 |
taaaagtctttttgaggaataatgaggttaggaataaattaaaagcatagttgtttacatgtagacatcacaaatatgtcatttacagatagaccaaata |
100 |
Q |
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| T |
40002107 |
taaaagtctttttgaggaataatgaggttaggaataaattaaaagcatagttgtttacatgtagacatcacaaatatgtcatttacagatagaccaaata |
40002008 |
T |
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| Q |
101 |
aaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttggaacagcattcggattggtttcattggcatgcgccttgccctgctagccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40002007 |
aaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttagaacagcattcggattggtttcattggcatgcgcattgccctgctagccca |
40001908 |
T |
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| Q |
201 |
gtcaaaactcatattaactaaattaatatgcttcattgtccttttagcacacaaaacatgtcaccatataacacattc |
278 |
Q |
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| T |
40001907 |
gtcaaaactcatattaactaaattaatatgcttcattgtttttttagcacacaaaacatgtcaccatataacacattc |
40001830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 43105016 - 43104966
Alignment:
| Q |
83 |
ttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttg |
133 |
Q |
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| T |
43105016 |
ttacagatagtccaaataaaaagtcaaatagtcctaaaaataactaacttg |
43104966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 43104918 - 43104824
Alignment:
| Q |
176 |
gcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtcctt-ttagcacacaaaacatgtcaccatat |
269 |
Q |
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| T |
43104918 |
gcatgcaccatgccctactagctcagtcgaaacttatattaactaaattaatgtgttacattgttcttcttggcacacaaaacatgtcatcatat |
43104824 |
T |
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