View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_21 (Length: 279)
Name: NF7088_low_21
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 6326790 - 6327017
Alignment:
| Q |
32 |
ttatagcaatacttgttagacaaagaaactaaacaacatgctgaaaaagtaaagatactactactataaactcaaacataaaacacttttttcttagttc |
131 |
Q |
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| T |
6326790 |
ttatagcaataattgttagacaaagaaactaaacaacatgctgaaaaagtaaagatactaatacta--aactaaaaaataaaacacttttttcttagttc |
6326887 |
T |
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| Q |
132 |
ttgagaatgaaaagtgaaaatactagttctaagctacataacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaaca |
231 |
Q |
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| T |
6326888 |
ttgagaatgaaaagtgaaaatactagttctaagctacacaacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaaca |
6326987 |
T |
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| Q |
232 |
ccgacctttccatctccaacaggatattct |
261 |
Q |
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| T |
6326988 |
ccgacctttccatctccaacaggatattct |
6327017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 6317650 - 6317761
Alignment:
| Q |
139 |
tgaaaagtgaaaatactagttctaagctacataacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacct |
238 |
Q |
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| T |
6317650 |
tgaaaagtgaaaatactagttcaaaactacataataaaatggggacacatatcgtgacacttcttggccgtctcaaggtctgcctcgacaacaccgacct |
6317749 |
T |
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| Q |
239 |
ttccatctccaa |
250 |
Q |
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| T |
6317750 |
ttccatctccaa |
6317761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 6329927 - 6330005
Alignment:
| Q |
181 |
ggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
259 |
Q |
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| T |
6329927 |
ggacgcatttcgtaacacttcttagccatctcaagatctgccctaacaactccaacctttccatctccaagaggatatt |
6330005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 6309938 - 6310002
Alignment:
| Q |
195 |
acacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
259 |
Q |
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| T |
6309938 |
acactttttcgccatctcgaggtctgccttgacaagtccgaccattccatctccaataggatatt |
6310002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 39832535 - 39832713
Alignment:
| Q |
78 |
aagtaaagatactactactataaactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagctacataacataa |
177 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39832535 |
aagtaaagatactacttcta--aactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactacttctaagctacataacataa |
39832632 |
T |
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| Q |
178 |
tagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
259 |
Q |
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||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
39832633 |
aaggaacacatctcgtgacacttcttagccatctcaaggtctgcctcgacaacacc-acctttccatttccaacgggatatt |
39832713 |
T |
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