View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_25 (Length: 255)
Name: NF7088_low_25
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 33685038 - 33685277
Alignment:
| Q |
16 |
tcactgcttcatggttcacatacaagtataaaaaatagtaacagacta----------------ctacaaatcagtaaatttagagtctaataataatta |
99 |
Q |
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| T |
33685038 |
tcactgcttcatggttcacatacaagtataaaaaatagtaacagactactacataagaaaactactacaaatcagcaaatttagagtctaataataatta |
33685137 |
T |
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| Q |
100 |
cctcaggatcaagttccgaaagtttcttcttaagatcatccaaataatcatcctttggcatccgcaatcgcctcacgcattcatcctcttccggattcct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33685138 |
cctcaggatcaagttccgaaagtttcttcttaagatcatccaaataatcatcctttggcatccgcaatcgcctcacgcattcatcctcttccggattcct |
33685237 |
T |
|
| Q |
200 |
tcaaaaccaaacgattatctcagttatcagttaacaaaac |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33685238 |
tcaaaaccaaacgattatctcagttatcagttaacaaaac |
33685277 |
T |
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