View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_3 (Length: 556)
Name: NF7088_low_3
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Complemental strand, 38487280 - 38486752
Alignment:
| Q |
13 |
acctgtggctcgatattttgcacctccgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487280 |
acctgtggctcgatattttgcacctccgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttgg |
38487181 |
T |
|
| Q |
113 |
agctgcattgtcaaaaaatcccagacagcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggacta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487180 |
agctgcattgtcaaaaaatcccagacagcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggacta |
38487081 |
T |
|
| Q |
213 |
ggaactgctgattcattattataccaagtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgacccca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487080 |
ggaactgctgattcattattataccaagtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgacccca |
38486981 |
T |
|
| Q |
313 |
tagaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatga |
412 |
Q |
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| T |
38486980 |
cagaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatga |
38486881 |
T |
|
| Q |
413 |
cccaatctatatacatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttcctt |
512 |
Q |
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| T |
38486880 |
cccaatctatatacatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttcctt |
38486781 |
T |
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| Q |
513 |
ttccaacttgaatgtattcatgatgtgtg |
541 |
Q |
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| T |
38486780 |
ttccaacttgaatgtattcatgatgtgtg |
38486752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 540
Target Start/End: Complemental strand, 3686099 - 3685984
Alignment:
| Q |
425 |
acatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaa |
524 |
Q |
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||||||| |||||| || ||||| ||||| ||||| || |||||||| |||||||| ||||| |||||||| |||||||| |||||||| || || || | |
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| T |
3686099 |
acatctctgctcaacacctgctcgccattgccacttgcgaccttggcctcaaacatggatatctgattcaagccaacatctcttcctttacctacctgta |
3686000 |
T |
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| Q |
525 |
tgtattcatgatgtgt |
540 |
Q |
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| T |
3685999 |
tatattcatgatgtgt |
3685984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 537
Target Start/End: Original strand, 26002243 - 26002337
Alignment:
| Q |
443 |
tgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttccaacttgaatgtattcatgatg |
537 |
Q |
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||||| ||||| ||| | |||| ||| ||||||||||||||||| || || | || || ||||||||||| |||||||| ||||| |||||||| |
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| T |
26002243 |
tgctcaccattcccattagcaatctttgcttcaaacattgatatctggttaagaccgacgtcccttcctttaccaacttgtatgtactcatgatg |
26002337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 3686511 - 3686299
Alignment:
| Q |
13 |
acctgtggctcgatattttgcacctccgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttgg |
112 |
Q |
| |
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||||||||||| || || ||||| || || || |||||||| |||||||||||| | || || |||| |||||||| |||| | |||| ||| || |
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| T |
3686511 |
acctgtggctctgtacttagcaccaccatgaagtatagtccgaccaaagaaatgggtgcgagttcccaaagagaatgtaaagaatagtgatccaagctgc |
3686412 |
T |
|
| Q |
113 |
agctgcattgtcaaaaaatcccagacagcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggacta |
212 |
Q |
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| |||||||||||| || ||||| || || ||||||| || || ||||| | ||| || |||| |||||| ||||||||||||| |||| |||| || |
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| T |
3686411 |
aactgcattgtcaagaagtcccatactgcaggaaggaacccgtgctcaagagtattttcaacaaccattgggagggcagtgaaaataccaagctggatta |
3686312 |
T |
|
| Q |
213 |
ggaactgctgatt |
225 |
Q |
| |
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||||||||||| |
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| T |
3686311 |
taaactgctgatt |
3686299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 30121675 - 30121158
Alignment:
| Q |
17 |
gtggctcgatattttgcacctccgtgcaggatagtccgcccaaagaaatggctacgtgtacccatggagaatgtgtagaaaactgatgaaagttggagct |
116 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || || ||||||||||| ||||||||||| |||||||| || || | |
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| T |
30121675 |
gtggctcgatattttgctccaccgtgcagaatagtccggccaaaaaaatgactgcgagtgcccatggagaaggtgtagaaaacggatgaaagctgaagtt |
30121576 |
T |
|
| Q |
117 |
gcattgtcaaaaaatcccagacagcttgaaggaatccatgttcaagggaattctccacaatcattggaagggcagtgaaaagtccaatttggactaggaa |
216 |
Q |
| |
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|||| || || || ||||||| |||||| ||||| || || |||||||||||||| |||||||| |||||||| ||||||||||||| ||||| | || |
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| T |
30121575 |
gcatcgttaagaagtcccagatagcttggaggaacccgtgctcaagggaattctctacaatcatcggaagggcggtgaaaagtccaagttggatgataaa |
30121476 |
T |
|
| Q |
217 |
ctgctgattcattattataccaagtgctttatttttattgctgttattttccatagcagcttcaataccactaagcgcaagcaataatcgaccccataga |
316 |
Q |
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||||||||| | || |||||||||||| || |||||||||||| ||||||| | |||| ||||||||| || || ||| ||||| ||||||| |
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| T |
30121475 |
ctgctgatttaagatggcaccaagtgctttgttgttattgctgttactttccattgatttctcaacaccactaagggcgagatatagtcgactccataga |
30121376 |
T |
|
| Q |
317 |
aatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatgaccca |
416 |
Q |
| |
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|| ||||| || || ||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| ||||| | ||| ||||| || |||||||||| |
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| T |
30121375 |
aaggcatatactgtcagaaccaccatcattgtgttgaagaagaaccccacagtagtgtagaagaatgaaagcattcggaaaaaatcaagcctatgaccca |
30121276 |
T |
|
| Q |
417 |
atctatatacatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattcaacccaacatcccttccttttcc |
516 |
Q |
| |
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| || || ||||||| ||||| | ||| ||||| || ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
30121275 |
acctgtacacatctctgctcaggatttgttccccgttgccactagcaaccttggcttcaaacattgatacttgattcagaccaacatcccttccctttcc |
30121176 |
T |
|
| Q |
517 |
aacttgaatgtattcatg |
534 |
Q |
| |
|
||| |||||||||||||| |
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| T |
30121175 |
aacctgaatgtattcatg |
30121158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 43955842 - 43955891
Alignment:
| Q |
488 |
tgattcaacccaacatcccttccttttccaacttgaatgtattcatgatg |
537 |
Q |
| |
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||||||| ||||||||| || || ||||||||||| |||||||||||||| |
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|
| T |
43955842 |
tgattcatcccaacatctctaccctttccaacttggatgtattcatgatg |
43955891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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