View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7088_low_31 (Length: 236)

Name: NF7088_low_31
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7088_low_31
NF7088_low_31
[»] chr1 (6 HSPs)
chr1 (38-219)||(32607133-32607309)
chr1 (41-220)||(32568733-32568903)
chr1 (38-110)||(32575153-32575225)
chr1 (38-75)||(32617351-32617388)
chr1 (41-75)||(32578122-32578156)
chr1 (127-167)||(32574452-32574492)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 32607133 - 32607309
Alignment:
Q  38 agaagaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgacttaattgtgagctatacggaagaactata 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  32607133 agaagaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt----gtgagctatacggaagaactata 32607228  T
Q  138 cactgagcacaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  32607229 cactgagcacaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaactctcattcatcca-acctgtaaat 32607309  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 32568733 - 32568903
Alignment:
Q  41 agaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgacttaattgtg-agctatacggaagaactataca 139  Q
    |||||||||||||||||||||| ||| |||||||| | ||||||||||||| |||||| |||||||  ||    ||| ||  ||| ||||||| |||       
T  32568733 agaagatggaaaatgtaagcttatgggttcaaaaagagggtcaatggaaaaaagattcattgcttgcgtt----gtgcagtgatagggaagaattatc-- 32568826  T
Q  140 ctgagcacaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatg 220  Q
       || ||||||||||||| |||||||||||||||||| ||||||||||||  || ||||||||||| | |||||||||||    
T  32568827 ---ag-acaaagattcttcaaagtctcagctaaagaagctgattaaaaggtcaaactctcattcatcaatacctgtaaatg 32568903  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 32575153 - 32575225
Alignment:
Q  38 agaagaagatggaaaatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt 110  Q
    |||| |||||||||||||||||||| |  ||||| ||| |||| |||||||||| ||||||||||||||||||    
T  32575153 agaaaaagatggaaaatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgactt 32575225  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 32617351 - 32617388
Alignment:
Q  38 agaagaagatggaaaatgtaagcttttggattcaaaaa 75  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  32617351 agaagaagatggaaaatgtaagcttatggattcaaaaa 32617388  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 32578122 - 32578156
Alignment:
Q  41 agaagatggaaaatgtaagcttttggattcaaaaa 75  Q
    |||||||||||||||||||||| ||||||||||||    
T  32578122 agaagatggaaaatgtaagcttatggattcaaaaa 32578156  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 32574452 - 32574492
Alignment:
Q  127 gaagaactatacactgagcacaaagattcttcgaagtctca 167  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  32574452 gaagcactatacactgaacgcaaagattcttcgaagtctca 32574492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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