View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_39 (Length: 212)
Name: NF7088_low_39
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 42893424 - 42893598
Alignment:
| Q |
23 |
atgaaggaaagggcctccttctgcagtttgtgtaattgcaatatttactactccacaaatttccaattcctgcatagttcttgggatttttccaaacaat |
122 |
Q |
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| T |
42893424 |
atgaaggaaagggcctccttctgcagtttgtgtaattgcaatatttactactccacaaatttccaattcctgcatagttcttgggatttttccaaacaat |
42893523 |
T |
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| Q |
123 |
taatacatttcttggcctcaatttacactcttcttctacccaatattactacttcaattcaattcaattcttctc |
197 |
Q |
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| T |
42893524 |
taatacatttcttggcctcaatttacactcttcttctacccaatattactacttcaattcaattcaattcttctc |
42893598 |
T |
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 25584653 - 25584580
Alignment:
| Q |
92 |
ctgcatagttcttgggatttttccaaacaattaatacatttcttggcctcaatttacactcttcttctacccaa |
165 |
Q |
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| T |
25584653 |
ctgcatacttcttgggatttttccaaacaattaatacatttcctggccacaatttacactcttcttctacccaa |
25584580 |
T |
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