View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_4 (Length: 548)
Name: NF7088_low_4
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Complemental strand, 52624890 - 52624381
Alignment:
| Q |
9 |
tttggtgttaggtgggaccatcggagctcggcgatgacaccagacgaggaggtgttttacctggtggcatttctgagatcagctttggatgctgagacac |
108 |
Q |
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| T |
52624890 |
tttggtgttaggtgggaccatcggagctcggcggtgacaccagacgaggaggtgttttacctggtggcatttctgagatcagctttggatgctgagacac |
52624791 |
T |
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| Q |
109 |
tggagcacctgactaatcagaaccgtcagatcctgggattctgtcatgattcgaagataggggttaaacagtacctaccccattacacaacaatgcagga |
208 |
Q |
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| T |
52624790 |
tggagcacctgactaatcagaaccgtcagatcctgggattctgtcatgattcgaagataggggttaaacagtacctaccccattacacaacaatgcagga |
52624691 |
T |
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| Q |
209 |
gtggatggaccactttggagataaatggacccaattcaatgccatgaagatgcaattcgaccctcaacgaatcttagcaacaggccagcgaatatttcat |
308 |
Q |
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| T |
52624690 |
gtggatggaccactttggagataaatggacccaattcaatgccatgaagatgcaattcgaccctcaacgaatcttagcaacaggccagcgaatatttcat |
52624591 |
T |
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| Q |
309 |
tttgaaccttccaatgtcattactaaggatgacatgtaatgcagcaaacgaaataaactcagaatgaatgatacaagtgtaaaaatgataaataattaaa |
408 |
Q |
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| T |
52624590 |
tttgaa---------gtcattactaaggatgacatgtaatgcagcaaacgaaataaactca----gaatgatacaagtgtaaaaatgataaataattaaa |
52624504 |
T |
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| Q |
409 |
gaattagaaacaggtgnnnnnnnccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaag |
508 |
Q |
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| T |
52624503 |
gaattagaaacaggtgtttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaag |
52624404 |
T |
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| Q |
509 |
attattgattgaaatggagttgg |
531 |
Q |
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| T |
52624403 |
attattgattgaaatggagttgg |
52624381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 398 - 531
Target Start/End: Complemental strand, 52616948 - 52616815
Alignment:
| Q |
398 |
aaataattaaagaattagaaacaggtgnnnnnnnccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgtt |
497 |
Q |
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| T |
52616948 |
aaataattaaagaattagaaacaggtgtttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgtt |
52616849 |
T |
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| Q |
498 |
gctatctgaagattattgattgaaatggagttgg |
531 |
Q |
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| T |
52616848 |
gctatctgaagattattgattgaaatggagttgg |
52616815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 52617038 - 52617006
Alignment:
| Q |
374 |
gaatgatacaagtgtaaaaatgataaataatta |
406 |
Q |
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| T |
52617038 |
gaatgatacaagtgtaaaaatgataaataatta |
52617006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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