View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_5 (Length: 531)
Name: NF7088_low_5
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 175 - 523
Target Start/End: Complemental strand, 35265144 - 35264795
Alignment:
| Q |
175 |
tataagctagtttatccgctataagctttacactattttttaccaaacagagccatatccttttttacgggcttgaataattctatttcccatgttagtg |
274 |
Q |
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| T |
35265144 |
tataagctagtttatccgctataagctttacactattttttaccaaacagagccatatccttttttacgggcttgaataattctatttcccatgttagtg |
35265045 |
T |
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| Q |
275 |
atcaattacagttgatgg-ttttagggcattcaaaaagaataaccaagaggttgaatatgctctttcctcatctgctaagaattaactgacttttgctac |
373 |
Q |
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| T |
35265044 |
atcaattacagttgatgggttttagggcattcaaaaagaataactaagaggttgaatatgctctttcctcatcttctaagaattaactgacttttgctat |
35264945 |
T |
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| Q |
374 |
cttctaatccaagttagtgaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagtagctaccaccttgggtgcaaaccca |
473 |
Q |
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| T |
35264944 |
cttctaatccaagttagtgaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagtagctaccaccttgggttcaaaccca |
35264845 |
T |
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| Q |
474 |
aatttaaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtcc |
523 |
Q |
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| T |
35264844 |
aatttaaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtcc |
35264795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 35265357 - 35265194
Alignment:
| Q |
17 |
caattgtttggggtgatactaaccactactggaactggattcctttgcctgattccaggttagcgcttagcttttcta--nnnnnnnnnncttcttaata |
114 |
Q |
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| T |
35265357 |
caattgtttggggtgatactaagcactactggaactggattcctttgcctgattccaggttagcgcttagcttttctatttctttctttttttcttaata |
35265258 |
T |
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| Q |
115 |
tatcttgattagctcctaatcaatactagatgctgtttcttgttcgccgaatcaaaccgttata |
178 |
Q |
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| T |
35265257 |
tatcttgattagctcttaatcaatactagatgctatttcttgttcgccgaatcaaaccgttata |
35265194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 244 - 398
Target Start/End: Complemental strand, 35272409 - 35272253
Alignment:
| Q |
244 |
ggcttgaataattctatttcccatgttagtgatcaattacagttgatggttt-tagggca-ttcaaaaagaataaccaagaggttgaatatgctctttcc |
341 |
Q |
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| T |
35272409 |
ggcttgaatgattctatttaccatgttagtgatcaattaccgttgatgggttctaggccaattcaaaaggagtaacaaagaggttgagtgtgctctttcc |
35272310 |
T |
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| Q |
342 |
tcatctgctaagaattaactgacttttgctaccttctaatccaagttagtgaagaat |
398 |
Q |
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| T |
35272309 |
tcatctgctaagaattaactgacttttgctatcttctaatcaaagttagtgaagaat |
35272253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 514
Target Start/End: Complemental strand, 35272235 - 35272169
Alignment:
| Q |
448 |
tagctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaatt |
514 |
Q |
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|||| ||||||| |||| |||||||||||| |||| | ||||| |||||||||||||||| |||||| |
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| T |
35272235 |
tagcaaccacctcgggttcaaacccaaattcaaagaacgttcagtcaaacaagtgcttgcaaaaatt |
35272169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 35272919 - 35272856
Alignment:
| Q |
17 |
caattgtttggggtgatactaaccactactggaactggattcctttgcctgattccaggttagc |
80 |
Q |
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| T |
35272919 |
caattgtttggggtgatgatagacgctattggaactggatttctatgcctgattccaggttagc |
35272856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 45534397 - 45534344
Alignment:
| Q |
24 |
ttggggtgatactaaccactactggaactggattcctttgcctgattccaggtt |
77 |
Q |
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| T |
45534397 |
ttggggtgatgacaaccgctactggaactggattgctatgcctgattccaggtt |
45534344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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