View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7088_low_6 (Length: 482)
Name: NF7088_low_6
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 14381589 - 14381125
Alignment:
| Q |
1 |
atgaatgtggtggaaatggaaatggaagtgatggtttgactacagtagctaagagtggaccagcacacagtggattccaatttcagaatcttggtcagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381589 |
atgaatgtggtggaaatggaaatggaagtgatggtttgactacagtagctaagagtggaccagcacacagtggattccaatttcagaatcttggtcagac |
14381490 |
T |
|
| Q |
101 |
tatggcccaccaagtgaatctcagccctacacgtcagcaatcaatcttgtatccatcagaaactggttattacccttcaatggtttatatgtcatcagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381489 |
tatggcccaccaagtgaatctcagccctacacgtcagcaatcaatcttgtatccatcagaaactggttattacccttcaatggtttatatgtcatcagct |
14381390 |
T |
|
| Q |
201 |
tacaatagattgtatcctataggaagagttggggatccttcttattatgttccatcttcaccctacacgtgtcctactagctttgttgatcaatatggta |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381389 |
tacaatagattgtatcctacgggaagagttggtgatccttcttattatgttccatcttcaccctacacgtgtcctactagctttgttgatcaatatggta |
14381290 |
T |
|
| Q |
301 |
gttatcaggttcaatctggaccgttggttccttttgagctatttagtgatgaaaatgctagtggatgttccattatgtgaggattgtgaagaaagaaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381289 |
gttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtgaggattgtgaagaaagaaaat |
14381190 |
T |
|
| Q |
401 |
gttgcacttttgttttggttttatggtccaagaagacactcctaggtagttttgcaatgataggt |
465 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14381189 |
gttgcacttttgtattggttttatggtccaagaagacactcctaggtagttttgcaatgataggt |
14381125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 49654587 - 49654618
Alignment:
| Q |
111 |
caagtgaatctcagccctacacgtcagcaatc |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49654587 |
caagtgaatctcagccctacacgtcagcaatc |
49654618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University