View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7088_low_9 (Length: 396)
Name: NF7088_low_9
Description: NF7088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7088_low_9 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 31080519 - 31080146
Alignment:
| Q |
14 |
agaatatgttcggccaggacctgctgatgtggtatgcagaattggtaggttgttagagtctccattatggagcccactgcctgcaactgtattgcttatt |
113 |
Q |
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| T |
31080519 |
agaatatgttcggccaggacctgctgatgtggtatgcagaattggtaggttgttagagtctccattatggagcccactgcctgtaactgtattgcttatt |
31080420 |
T |
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| Q |
114 |
atttggtcatagtgcaaagtaatgaaat-----agtccatcatctttatagatttccttcaacnnnnnnnnn-gtccatcatcgtcacaaaacttatctt |
207 |
Q |
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| T |
31080419 |
atttggtcatagtgcaaagtaatgaaatgaaatagtccatcatctttatagattcccttcaaaaaaaaaaaaagtccatcattgtcacaaaacttatctt |
31080320 |
T |
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| Q |
208 |
cttttgtatgaaaattctctctcgtatttatacgtttgctcttaaataccaagctcattccatcattgagtttcacgtatttgattatggaatttctcga |
307 |
Q |
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| T |
31080319 |
cttttgtatgaaaattctctctcgtatttatacgtttgctcttaaataccaagctcattccatcattgagtttcatgtatttgattatggaatttctcga |
31080220 |
T |
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| Q |
308 |
ttaatccttaaaaatatattttcctattctattaagccaatattttttaaggcatcattaaatacagtcaaagt |
381 |
Q |
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| T |
31080219 |
ttaatccttaaaaatatattttcctattctattaagccaatattttttaaggcatcattaaatacagtcaaagt |
31080146 |
T |
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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 70348 - 70385
Alignment:
| Q |
342 |
agccaatattttttaaggcatcattaaatacagtcaaa |
379 |
Q |
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| T |
70348 |
agccaatatttttgaaggcatcatttaatacagtcaaa |
70385 |
T |
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