View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7089_high_4 (Length: 283)
Name: NF7089_high_4
Description: NF7089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7089_high_4 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 46223062 - 46222808
Alignment:
| Q |
20 |
gtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccaccactccaatttcttcttcatcttacttttctctccctttcc |
119 |
Q |
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| T |
46223062 |
gtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccaccactccaatttcttcttcatcttacttttctctccctttcc |
46222963 |
T |
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| Q |
120 |
acttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatccaatccatcacataatccttcacacttccactcttcttcaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46222962 |
acttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatccaatccatcacataatccttcacacttccactcttcttcaat |
46222863 |
T |
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| Q |
220 |
ccaacaccaaccatctccctctcatattcctcaaagttagtattaacactctctg |
274 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46222862 |
ccaccaccaaccatctccctctcatattcctcaaagctagtattaacactctctg |
46222808 |
T |
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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 227089 - 227119
Alignment:
| Q |
170 |
ttccaatccaatccatcacataatccttcac |
200 |
Q |
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| T |
227089 |
ttccaatccaatccatcacataatccttcac |
227119 |
T |
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