View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7089_low_1 (Length: 615)
Name: NF7089_low_1
Description: NF7089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7089_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 46091700 - 46092139
Alignment:
| Q |
19 |
ggtgatgtgccgtttcatccaagaaaaccataatcgtcaacatatatgacaactaattaacctaatactttaaaaaccaaatcgggaatttcatctggtt |
118 |
Q |
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| T |
46091700 |
ggtgatgtgccgtttcatccaagaaaaccataatcgtcaacatatatgacaactaattaacctaatactttaaaaaccgaatcgggaatttcatctggtt |
46091799 |
T |
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| Q |
119 |
aaacattgtattgattttaactacaattaaattgagttttcgtcttgttttataccgattcgagcaatttaaattggttgaatcattattcagagatctt |
218 |
Q |
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| T |
46091800 |
aagcattgtattgattttaactacagttaaattgagttttcgtcttgttttataccgattcaagcaatttaaattggttgaatcattattcagagatctt |
46091899 |
T |
|
| Q |
219 |
gtcgggtcgatattcttttcaatttgaaaacattgatttaacccaaaggaaaacaattctttttcctggataatttgatcatatcagtgacagtccttta |
318 |
Q |
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| T |
46091900 |
gtcgggtcgatattcttttcaatttgaaaacattgatttaacccaaaggaaaacaattctttttcctggataatttgatcatatcagtgacagtccttta |
46091999 |
T |
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| Q |
319 |
ccttcccttttcctagttttcaggctttcaaaagcttcctaccgttccctacaacctactagagaaagaaaagatgaggatatattgcttacagctagga |
418 |
Q |
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| T |
46092000 |
ccttcccttttcctagttttcaggctttcaaaagcttcctaccgttccctacaacctactagagaaagaaaagatgaggatatattgcttacagctagga |
46092099 |
T |
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| Q |
419 |
ctattagttgtgagcatatatctttcaccaaaccaaagat |
458 |
Q |
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| T |
46092100 |
ctattagttgtgagcatatatctttcaccaaaccaaagat |
46092139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 375 - 608
Target Start/End: Original strand, 46097707 - 46097941
Alignment:
| Q |
375 |
tactagagaaagaaaagatgaggatatattgcttacagctaggactattagttgtgagcatatatctttcaccaaaccaaagatttcttannnnnnnnn- |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46097707 |
tactagagaaagaaaagatgaggatatattgcttacagctaggactattagttgtgagcatatatctttcaccaaaccaaagatttcttatttttttttt |
46097806 |
T |
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| Q |
474 |
aaataaaataaaatcatatagtcatcattcttccaaaatgagtaaaagctaattgcttcacataaagttgggtcactggtttatatcactattgttctta |
573 |
Q |
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| T |
46097807 |
aaataaaataaaatcatatagtcatcattcttccaaaatgagtaaaagctaattgcttcacataaagttgggtcactggtttatatcactattgttctta |
46097906 |
T |
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| Q |
574 |
aaaatgcaccaagaactccattaacccaccaccaa |
608 |
Q |
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| T |
46097907 |
aaaatgcaccaagaactccattaacccaccaccaa |
46097941 |
T |
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