View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7089_low_2 (Length: 538)
Name: NF7089_low_2
Description: NF7089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7089_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 230 - 530
Target Start/End: Original strand, 16306691 - 16306991
Alignment:
| Q |
230 |
ctctacatgagaaactggtttacacagtttcaaatagaagtcttgtaggtctgttcaataagcttaagaaaatttccttctcttttatttttgtatggtc |
329 |
Q |
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| T |
16306691 |
ctctacatgagaaactggtttacacagtttcaaatagaagtcttgtaggtctgttcaataagcttaagaaaatttccttctcttttatttttgtatggtc |
16306790 |
T |
|
| Q |
330 |
tgttcatttccaggaaaattagccagctcatgaagatgaataattggaaaaaagctttaacaaactctcctctgttttgggactgaatttcctagcaaat |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16306791 |
tgttcatttccaggaaaattagccagctcatgaagatgaataattggaaaaaagctttaacaaactctcctctgtttcgggactgaatttcctagcaaat |
16306890 |
T |
|
| Q |
430 |
aggtagcacggcttccgaaatccattccaaaaacaagtccatctttgtacttctttctgtaagaaacaaatgaaaattgtgaagtcgcttaaagtattat |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16306891 |
aggtagcacggcttccgaaatccattccaaaaacaagtccatctttgtacttctttctgtaagaaacaaatgaaaattgtgaagtcgcttaaagtattat |
16306990 |
T |
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| Q |
530 |
c |
530 |
Q |
| |
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| |
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| T |
16306991 |
c |
16306991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 16306475 - 16306632
Alignment:
| Q |
14 |
catgtacttctatcaactatttcattttcttaaattattattagtgtcgacgcgtcaatgtcgtgtctatgtttcacagagcaaaacttctacactaata |
113 |
Q |
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| T |
16306475 |
catgtacttctatcaactatttcatttttttaaattattattagtgtcgacgcgtcaatgtcgtgtctatgtttcacagagcaaaacttctacactaata |
16306574 |
T |
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| Q |
114 |
tttacaacaacggttgctattgagcaactgttgcctcgcaaacacaatttctatgaac |
171 |
Q |
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| T |
16306575 |
tttacaacaacggttgctattgagcaactgttgcctcgcaaacacaatttctatgaac |
16306632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 364 - 515
Target Start/End: Original strand, 16296723 - 16296873
Alignment:
| Q |
364 |
gatgaataattggaaaaaagctttaacaaactctcctctgttttgggactgaatttcctagcaaataggtagcacggcttccgaaatccattccaaaaac |
463 |
Q |
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|||| ||||||||| || ||||| | ||| | |||||||| | ||||||||||||||||| ||||||||||||||||| ||| ||||||||| || | |
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| T |
16296723 |
gatgtataattggagaagagcttcagtaaattgtcctctgtatcaggactgaatttcctagcgaataggtagcacggcttttgaattccattccataagc |
16296822 |
T |
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| Q |
464 |
aagtccatctttgtacttctttctgtaagaaacaaatgaaaattgtgaagtc |
515 |
Q |
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| T |
16296823 |
aaggccatatttgcacttctttctg-cagaaacaaatgaaaattgttaagtc |
16296873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 490
Target Start/End: Complemental strand, 52960962 - 52960885
Alignment:
| Q |
413 |
tgaatttcctagcaaataggtagcacggcttccgaaatccattccaaaaacaagtccatctttgtacttctttctgta |
490 |
Q |
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|||||||||||||||||||||| || |||||| ||| |||||||| || |||| ||| ||||| ||||||||||||| |
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| T |
52960962 |
tgaatttcctagcaaataggtaacatggcttctgaatcccattccataagcaaggccaactttgcacttctttctgta |
52960885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 17930489 - 17930445
Alignment:
| Q |
35 |
tcattttcttaaattattattagtgtcgacgcgtcaatgtcgtgt |
79 |
Q |
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| T |
17930489 |
tcattttcttaaattagtattggtgtcgacgtgtcaatgtcgtgt |
17930445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 26462669 - 26462708
Alignment:
| Q |
26 |
tcaactatttcattttcttaaattattattagtgtcgacg |
65 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| |
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| T |
26462669 |
tcaattatttcattttcttaaattattatcagtgtcgacg |
26462708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 30585132 - 30585160
Alignment:
| Q |
33 |
tttcattttcttaaattattattagtgtc |
61 |
Q |
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| T |
30585132 |
tttcattttcttaaattattattagtgtc |
30585160 |
T |
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