View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7089_low_3 (Length: 505)
Name: NF7089_low_3
Description: NF7089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7089_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 204 - 489
Target Start/End: Complemental strand, 32550868 - 32550583
Alignment:
| Q |
204 |
atatcatggtgttattcaaattcatatagtatttagtttgaatctagttatttttatttgtgtgtacattaacagagtgccacaccaaagaaaagtgcta |
303 |
Q |
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| T |
32550868 |
atatcatggtgttattcaaattcatacagtattgagtttgaatttagttatttttatttgtgtgtacattaacagagtgccacaccaaagaaaagtgcta |
32550769 |
T |
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| Q |
304 |
gtggaaagaagactaatgaaaaaacctctatagctaatggaattatggggtcaacttcgcggaacgttttgtctgatttcgataaagttgttacaccgaa |
403 |
Q |
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| T |
32550768 |
gtggaaagaagactaatgaaaaaacctctatagctaatggaattatggggtcaacttcgcggaatgttttgtctgatttcgataaagttgttacaccgaa |
32550669 |
T |
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| Q |
404 |
gcctgatctgcggttagaggcaaaattgtcagctgaggttagtgtggattggttctgcattgttggtgtttgttgatttgacgggc |
489 |
Q |
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| T |
32550668 |
gcctgatctgcggttagaggcaaaattgtcagctgaggttagtgtggattggttctgcattgttggtgtttgttgatttgacgggc |
32550583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 32551054 - 32550895
Alignment:
| Q |
18 |
ctcttccctctcaagccaccgctcaacaagccagaagaaaacgacgatagcggcgatgaacaagatgaggattattgcgacacgaagaagaatcgtagga |
117 |
Q |
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| T |
32551054 |
ctcttccctctcaagccaccgctcaacaagccagaagaaaacgacgatagcggcgatgaacaagatgaggattattgcgacacgaagaagaatcgtagga |
32550955 |
T |
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| Q |
118 |
agagaaaatccaaaggaaaaattactccgttaaataaaggttctaaggttagtggtcctc |
177 |
Q |
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| T |
32550954 |
agagaaaatccaaaggaaaaattactccgttaaataaaggttctaaggtcagtggtcctc |
32550895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 10573325 - 10573284
Alignment:
| Q |
407 |
tgatctgcggttagaggcaaaattgtcagctgaggttagtgt |
448 |
Q |
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| T |
10573325 |
tgatttgcggttggaggcgaaattgtcagctgaggttagtgt |
10573284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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