View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7090_high_2 (Length: 229)
Name: NF7090_high_2
Description: NF7090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7090_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 10253206 - 10253371
Alignment:
| Q |
1 |
tcaagattaattattggataaatggtgagaagaatctctctcattttctgattttgtgaataatgatcacggtacaagattatttatcaagtcatcgttg |
100 |
Q |
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| T |
10253206 |
tcaagattaattattggataaatggtgagaagaagctttctccttttctgattttgtgaataatgatcacggtacaagattatttatcaagtaatatttg |
10253305 |
T |
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| Q |
101 |
tgataccccttcaagtaggggaataaatatttatcaaacccaacttgcacacgagcttgtgaaatg |
166 |
Q |
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| T |
10253306 |
tgataccccttcaagtaggggaataaatatttatcaaacccaacttgcacacgagcttgtgaaatg |
10253371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 10244340 - 10244407
Alignment:
| Q |
162 |
aaatgctatgaagtttttctcttagaatacacttctttacaaggcctcagtaaagtagtaatgcactt |
229 |
Q |
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| T |
10244340 |
aaatgctatgaagtttttctcttagaatacacttctttacaatgcctcagtaaagtagtaatgtactt |
10244407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 10266089 - 10266155
Alignment:
| Q |
98 |
ttgtgataccccttcaagtaggggaataaatatttatcaaacccaacttgcacacgagcttgtgaaat |
165 |
Q |
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| T |
10266089 |
ttgtgataaccct-caagttggggaataaatatttatcaagcccaacatggacacgagcaagtgaaat |
10266155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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