View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7090_low_1 (Length: 275)
Name: NF7090_low_1
Description: NF7090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7090_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 28731123 - 28730882
Alignment:
| Q |
18 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28731123 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacactcccggcgccaccgtgcttcctgctattatgc |
28731024 |
T |
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| Q |
118 |
gcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaa |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
28731023 |
gcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaa |
28730924 |
T |
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| Q |
218 |
caacatgactattttcgccgttgatgatctttctatattctc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730923 |
caacatgactattttcgccgttgatgatctttctatattctc |
28730882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 38608574 - 38608815
Alignment:
| Q |
18 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| |||||||| |||| |
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| T |
38608574 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgctataatgc |
38608673 |
T |
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| Q |
118 |
gcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaa |
217 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
38608674 |
gcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaa |
38608773 |
T |
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| Q |
218 |
caacatgactattttcgccgttgatgatctttctatattctc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608774 |
caacatgactattttcgccgttgatgatctttctatattctc |
38608815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 38793357 - 38793598
Alignment:
| Q |
18 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| |||||||| |||| |
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| T |
38793357 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgctataatgc |
38793456 |
T |
|
| Q |
118 |
gcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaa |
217 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
38793457 |
gcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaa |
38793556 |
T |
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| Q |
218 |
caacatgactattttcgccgttgatgatctttctatattctc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793557 |
caacatgactattttcgccgttgatgatctttctatattctc |
38793598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 38121549 - 38121308
Alignment:
| Q |
18 |
gttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgc |
117 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
38121549 |
gttgagagaatgagttctctctcctttccgtttcatcctgatcaccgttccggtgctcatgttcacactcccggcgccaccgtgctccctgctattatgc |
38121450 |
T |
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| Q |
118 |
gcctcatgctacgagacacagcgctcaggctccgtaataacggtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaa |
217 |
Q |
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|||||||||||||||| || | | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
38121449 |
gcctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaa |
38121350 |
T |
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| Q |
218 |
caacatgactattttcgccgttgatgatctttctatattctc |
259 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38121349 |
caacatgactattttcgctgttgatgatctttctatattctc |
38121308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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