View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7090_low_2 (Length: 250)
Name: NF7090_low_2
Description: NF7090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7090_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45650292 - 45650056
Alignment:
| Q |
1 |
caacggcgtgggtcaggcaagatgtgcattgctggagatgcaagtcaaaacattcgnnnnnnnnnnnnggataaaaatgaaagtcaaatctcaaatttca |
100 |
Q |
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| T |
45650292 |
caacggcgtgggtcaggcaagatgtgcattgctggagatgcaagtcaaaacattcgttttttatttttggataaaaatgaaagtcaaatctcaaatttca |
45650193 |
T |
|
| Q |
101 |
agaacaaggcacaaaccaaaccaccagtgcccttctgtttgggttccttccggatcatcccaacgacttttcttcttcttttaataacttcaacaaacct |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45650192 |
agaacaaggcacaaaccaaacca---gtgcccttctgtttgggttccttccggatcatcccaacgacttttcttcttcttttaataacttcaacaaacct |
45650096 |
T |
|
| Q |
201 |
taaaataggaaaataagcatgttacttgcatttattcatc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45650095 |
taaaataggaaaataagcatgttacttgcatttattcatc |
45650056 |
T |
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