View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7091_high_2 (Length: 333)
Name: NF7091_high_2
Description: NF7091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7091_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 6357654 - 6357990
Alignment:
| Q |
1 |
cccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacctgtttccaacaaacttggagttaccaaatgctcgtcgtgagat |
100 |
Q |
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| T |
6357654 |
cccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacatgtttccaacaaacttggagttaccaaatgctcgttgtgagat |
6357753 |
T |
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| Q |
101 |
atagagctgggaaaagatcgaatcaattgtagaatcagtcaca----tagtttcttcaaaaacaaatttattcattgtacaccacaagttccacataatc |
196 |
Q |
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| T |
6357754 |
atagagctgggaaaagatcgaatcgattgtagaatcagtcacaatcttagtttcttcaaaaacaaatttattcattgtacaccacaagttccacataatc |
6357853 |
T |
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| Q |
197 |
aaagtagctatgtttccttcttcgacaaccatattttgcaaggcatctaaaatcttcaaactatctgactcaagaattcttcgaggaactttcaaggaac |
296 |
Q |
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| T |
6357854 |
aaagtagctatgtttccttcttcgacaaccatattttgcaaggcatctaaaatcttcaaactatctgactcaagaattcttcgaggaactttcaaggaac |
6357953 |
T |
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| Q |
297 |
cacatgtacgcaaaatagacacagttcacaggaaaag |
333 |
Q |
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| T |
6357954 |
cacatgtacgcaaaatagacacagttcgcaggcaaag |
6357990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 7588651 - 7588715
Alignment:
| Q |
150 |
cttcaaaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttcct |
214 |
Q |
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| T |
7588651 |
cttcaaagacaaatttattccttatacaccaaatattccacatgatcaaaggagctatgattcct |
7588715 |
T |
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