View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7092_high_2 (Length: 506)
Name: NF7092_high_2
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 55067705 - 55067224
Alignment:
| Q |
19 |
gaatttaattgccacattgccttttcatttttctcatctaaccttattaattttgtttcataacataaatgtgatg---tatgtaatactgcgtctaggt |
115 |
Q |
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| T |
55067705 |
gaatttaattgccacattgccttttcatttttctcatctaatcttattaattttgtttcataacataactgtgatgatgtatgtaatactgcgtctaggt |
55067606 |
T |
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| Q |
116 |
ggctagggtgtatgtatctgtttttggagatgaaagagggaaggaagtggccatagctgggttgaaatcaaaagccaaatatgttcgcggtgagttgggg |
215 |
Q |
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| T |
55067605 |
ggctagggtttatgtatctgtttttggagatgaaagagggaaggaagtggccatggctgggttgaaatcaaaagccaaatatgttcgcggtgagttaggg |
55067506 |
T |
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| Q |
216 |
aggcgtatgaagttgcggttaactcctgagatacgctttttggaggatgaatcttttgagagaggaagcagggtaagaattactatatttaccgttcttc |
315 |
Q |
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| T |
55067505 |
aggcgtatgaagttgcggttaactcctgagatacgctttttggaggatgaatcttttgagagaggaagcagggtaagaattactatatttaccgttcttc |
55067406 |
T |
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| Q |
316 |
tatgttttgcaattgtaagtttgtgctgttctgtttccactttggccctttcctgaccaaccatctctcagccttctactactaaattactaattgctaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067405 |
tatgttttgcaattgtaagtttgtgctgttctgtttccactttggccctttcctgaccaaccatctctcagccttctactactaaattactaattgctaa |
55067306 |
T |
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| Q |
416 |
taacaaacgtccttttgctttgccacatgtcatcaattcctttatttaattaacatgctacactctctcctagtagtataat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067305 |
taacaaacgtccttttgctttgccacatgtcatcaattcctttatttaattaacatgctacactctctcctagtagtataat |
55067224 |
T |
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