View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7092_high_5 (Length: 333)
Name: NF7092_high_5
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 1664683 - 1664874
Alignment:
| Q |
44 |
ttgcgtattaaattgaccatcttttttaagctacaaaaaatttattgcaagtaatatattttatattctaaatccatcaatgtataaatttcacaacatt |
143 |
Q |
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| T |
1664683 |
ttgcgtattaaattgaccatcttttttaagctacaaaaaatttattgcaagtaatatattttatattctaaatccatcaatgtataaatttcacaacatt |
1664782 |
T |
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| Q |
144 |
aaaattgaataaagaaaataaaacttcaaccttccaatttcacatataatatgttaaataaagttaggttaggaacattacatccctagatc |
235 |
Q |
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| T |
1664783 |
aaaattgaataaagaaaataaaacttcaaccttccaatttcacatatagtatgttaaataaagttaggttaggaacaatacatccctagatc |
1664874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 1664919 - 1664957
Alignment:
| Q |
280 |
tagtaactctatttcacatttaaaaagcatcacaaagat |
318 |
Q |
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| T |
1664919 |
tagtaactctatttcacatttaaaaagcatcacaaagat |
1664957 |
T |
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