View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7092_high_6 (Length: 325)
Name: NF7092_high_6
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 24825506 - 24825217
Alignment:
| Q |
17 |
gtgtagtatcatagaaggaatttgtgatcttatagaatttttgctcaaaataattttcacaagattttttccaattgaaggaaattgtggacctaactta |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24825506 |
gtgtactatcatagaaggaatttgtgatcttatagaatttttgctcaaaataattttcacaagattttttccaattgaaggaaattgtggacctaactta |
24825407 |
T |
|
| Q |
117 |
tttccatcaaaattaacctcttcaagagaagttaaactcttaagatctggaatatttccattgaaaagattatcagcaaaaacaatactcttcaaattct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24825406 |
tttccatcaaaattaacctcttcaagagaggttaaactcttaagatctggaatatttccattgaaaagattatcagcaacaacaatactcttcaaattct |
24825307 |
T |
|
| Q |
217 |
tcattgaagaaattgaagaaggaatttcaccagaaatgaaatttgaactaatgttgagaatttctagtgaccaaaacctgttgatttttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24825306 |
tcattgaagaaattgaagaaggaatttcaccagaaatgaaatttgaactaatgttgagaatttctagtgaccaaaacctgttgatttttg |
24825217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 16216314 - 16216418
Alignment:
| Q |
124 |
caaaattaacctcttcaagagaagttaaactcttaagatctggaatatttccattgaaaagattatcagcaaaaacaatactcttcaaattcttcattga |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||| || || |||| |||| | |||||||||||| ||||||||| ||||||| |||||| | ||| |||||||| |
|
|
| T |
16216314 |
caaaattaacctcttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttgagatttttcattga |
16216413 |
T |
|
| Q |
224 |
agaaa |
228 |
Q |
| |
|
||||| |
|
|
| T |
16216414 |
agaaa |
16216418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 16963573 - 16963688
Alignment:
| Q |
128 |
attaacctcttcaagagaagttaaactcttaagatctggaatatttccattgaaaagattatcagcaaaaacaatactcttcaaattcttcattgaagaa |
227 |
Q |
| |
|
||||| |||||||||||| ||||| || || |||| |||| | |||||||||||| ||||||||| ||||||| |||||| | | | |||||||||||| |
|
|
| T |
16963573 |
attaatctcttcaagagaggttaatcttttgagattaggaacacttccattgaaaaaattatcagccaaaacaagactcttaagacttttcattgaagaa |
16963672 |
T |
|
| Q |
228 |
attgaagaaggaattt |
243 |
Q |
| |
|
| ||| || ||||||| |
|
|
| T |
16963673 |
actgatgatggaattt |
16963688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University