View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7092_low_1 (Length: 890)
Name: NF7092_low_1
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 383 - 873
Target Start/End: Complemental strand, 13518996 - 13518506
Alignment:
| Q |
383 |
aagtgttactggtgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
482 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13518996 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13518897 |
T |
|
| Q |
483 |
gaggaagttaatatgatttctgggcaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
582 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518896 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13518797 |
T |
|
| Q |
583 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcttttga |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518796 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcttttga |
13518697 |
T |
|
| Q |
683 |
ttctattactcatggtattaaattgtggcatcacaaccttatcaccatattttcctaactgcatctaaaaccatgtttttacttctgttttttcttgttc |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13518696 |
ttctattactcatggtattaaattgtggcatcacaaccttatcaccatattttcctaactgcatctaaaaccatgtttttacttctgttttttcttgttc |
13518597 |
T |
|
| Q |
783 |
tctatataattttccccctaaatttagnnnnnnnnnnnnnnnnttgcattaatatgtttatcaagaatcataatggtttttctgtctatat |
873 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
13518596 |
tctatataatttttcccctaaatttataaaagaaaataaaaaattgcatcaatatgtgtatcaagaatcataatggtttttctgtatatat |
13518506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 383 - 873
Target Start/End: Complemental strand, 13608529 - 13608039
Alignment:
| Q |
383 |
aagtgttactggtgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
482 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13608529 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13608430 |
T |
|
| Q |
483 |
gaggaagttaatatgatttctgggcaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
582 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608429 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13608330 |
T |
|
| Q |
583 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcttttga |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608329 |
cacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaatcttcaggtactattacttccacatttagatcttgaaaactatgcttttga |
13608230 |
T |
|
| Q |
683 |
ttctattactcatggtattaaattgtggcatcacaaccttatcaccatattttcctaactgcatctaaaaccatgtttttacttctgttttttcttgttc |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608229 |
ttctattactcatggtattaaattgtggcatcacaaccttatcaccatattttcctaactgcatctaaaaccatgtttttacttctgttttttcttgttc |
13608130 |
T |
|
| Q |
783 |
tctatataattttccccctaaatttagnnnnnnnnnnnnnnnnttgcattaatatgtttatcaagaatcataatggtttttctgtctatat |
873 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
13608129 |
tctatataatttttcccctaaatttataaaagaaaataaaaaattgcatcaatatgtgtatcaagaatcataatggtttttctgtatatat |
13608039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 13519145 - 13519028
Alignment:
| Q |
240 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13519145 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
13519046 |
T |
|
| Q |
340 |
aaagacatggatataatc |
357 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
13519045 |
aaacacatggatataatc |
13519028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 13608678 - 13608561
Alignment:
| Q |
240 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608678 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
13608579 |
T |
|
| Q |
340 |
aaagacatggatataatc |
357 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
13608578 |
aaacacatggatataatc |
13608561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 13519362 - 13519258
Alignment:
| Q |
17 |
aatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13519362 |
aatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcat |
13519263 |
T |
|
| Q |
117 |
catca |
121 |
Q |
| |
|
||||| |
|
|
| T |
13519262 |
catca |
13519258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 13608895 - 13608791
Alignment:
| Q |
17 |
aatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608895 |
aatatagcctttacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcat |
13608796 |
T |
|
| Q |
117 |
catca |
121 |
Q |
| |
|
||||| |
|
|
| T |
13608795 |
catca |
13608791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 530 - 631
Target Start/End: Complemental strand, 21038468 - 21038367
Alignment:
| Q |
530 |
taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaac |
629 |
Q |
| |
|
||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
21038468 |
taacaagggtcagtattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagatacaac |
21038369 |
T |
|
| Q |
630 |
aa |
631 |
Q |
| |
|
|| |
|
|
| T |
21038368 |
aa |
21038367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 631
Target Start/End: Original strand, 36568460 - 36568561
Alignment:
| Q |
530 |
taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaac |
629 |
Q |
| |
|
|||||| || || |||||||| || || ||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||| ||| |
|
|
| T |
36568460 |
taacaaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataac |
36568559 |
T |
|
| Q |
630 |
aa |
631 |
Q |
| |
|
|| |
|
|
| T |
36568560 |
aa |
36568561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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