View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7092_low_11 (Length: 309)

Name: NF7092_low_11
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7092_low_11
NF7092_low_11
[»] chr8 (2 HSPs)
chr8 (17-292)||(44667462-44667744)
chr8 (17-261)||(6816664-6816906)
[»] chr4 (3 HSPs)
chr4 (17-264)||(28657526-28657776)
chr4 (172-215)||(17165905-17165948)
chr4 (172-215)||(17171482-17171525)
[»] chr2 (2 HSPs)
chr2 (25-275)||(2037774-2038024)
chr2 (15-95)||(29464153-29464233)
[»] chr6 (3 HSPs)
chr6 (17-261)||(34518825-34519059)
chr6 (168-215)||(21508389-21508436)
chr6 (17-86)||(21508265-21508333)
[»] chr7 (2 HSPs)
chr7 (179-265)||(28382724-28382810)
chr7 (156-265)||(28387055-28387164)
[»] scaffold0001 (1 HSPs)
scaffold0001 (102-139)||(20523-20560)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 44667462 - 44667744
Alignment:
Q  17 ttatattattttagcaaactacatgaatatttactttattat-------attagggtgggtaaaatgggtgacatttattaagttactgatgtagtttta 109  Q
    |||||||||||||| |||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44667462 ttatattattttagtaaactacatgaatatttactttattatttattatattagggtaggtaaaatgggtgacatttattaagttactgatgtagtttta 44667561  T
Q  110 ttataattgtttctaattttatgctacttatcggttaggaaatacccgttcattttcattcattactagaaagtaggagatacaacttcttccctattca 209  Q
    |||||||||||||||||||||||||| ||| ||||||||||  || |  |||||||||||||||||||||||||||||||||||||||||||||| || |    
T  44667562 ttataattgtttctaattttatgctatttaccggttaggaagcacacactcattttcattcattactagaaagtaggagatacaacttcttccctgttta 44667661  T
Q  210 tatgaccatgacacaccactttccactccatgatttagttccacatttttaggaagagagttagtgggagagttattagaata 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44667662 tatgaccatgacacaccactttccactccatgatttagttccacatttttaggaagagagttagtgggagagttattagaata 44667744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 6816664 - 6816906
Alignment:
Q  17 ttatattattttagcaaactacatgaatatttactttattatattagggtgggtaaaatgggtgacatttattaagttactgatgtagttttattataat 116  Q
    |||| |||| ||||||||||  |||||||| || ||||||||||||| || || ||||| ||||||||||||||||||||| |  |||||||||||||||    
T  6816664 ttatcttatcttagcaaactttatgaatatatagtttattatattagagtaggaaaaattggtgacatttattaagttactaacttagttttattataat 6816763  T
Q  117 tgtttctaattttatgctacttatcggttaggaaatacccgttcattttcattcattactagaaagtaggagatacaacttcttccctattcatatgacc 216  Q
    |||||||| |||||||||| |||   ||||||||  ||  | |||| || |||||||||||||||||||||||||||| |||||  |  |||||||||||    
T  6816764 tgtttctagttttatgctagttactagttaggaagcacatgatcatgtttattcattactagaaagtaggagatacaatttctt--cggttcatatgacc 6816861  T
Q  217 atgacacaccactttccactccatgatttagttccacatttttag 261  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  6816862 atgacacaccactttccactccatgaattagttccacatttttag 6816906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 28657776 - 28657526
Alignment:
Q  17 ttatattattttagcaaactacatgaatatttactttattatattagggtgggtaaaatgggtgacatttattaagttactgatgtagttttattataat 116  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||| |  |||||||||||||||    
T  28657776 ttatcttattttagcaaactatatggatatttactttattatattagagtagg-aaaatgggtgacatttattaagttactaacttagttttattataat 28657678  T
Q  117 tgtttctaattttatgctacttatcggttaggaaatacccgttcat----tttcattcattactagaaagtaggagatacaacttcttccctattcatat 212  Q
    |||||||| |||||||||| |||   ||||||||  || || ||||     |||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  28657677 tgtttctagttttatgctagttactagttaggaagaacacggtcatgatcattcattcactactagaaagtaggagatacagcttcttccttattcatat 28657578  T
Q  213 gaccatgacacaccactttccactccatgatttagttccacatttttaggaa 264  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28657577 gaccacgacacaccactttccactccatgatttagttccacttttttaggaa 28657526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 17165948 - 17165905
Alignment:
Q  172 ttactagaaagtaggagatacaacttcttccctattcatatgac 215  Q
    |||||||||||||||||||| |||||||||| |||| |||||||    
T  17165948 ttactagaaagtaggagatataacttcttccttatttatatgac 17165905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 17171525 - 17171482
Alignment:
Q  172 ttactagaaagtaggagatacaacttcttccctattcatatgac 215  Q
    |||||||||||||||||||| |||||||||| |||| |||||||    
T  17171525 ttactagaaagtaggagatataacttcttccttatttatatgac 17171482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 2037774 - 2038024
Alignment:
Q  25 ttttagcaaactacatgaatatttactttattatattagggtgggtaaaatgggtgacatttattaagttactgatgtagttttattataattgtttcta 124  Q
    ||||||||||||  |||||||| || ||||||||||||| || || ||||| |||| |||||||||||||||| |  || ||||||||||||||||||||    
T  2037774 ttttagcaaactttatgaatatgtagtttattatattagagtaggaaaaattggtgtcatttattaagttactaacttaattttattataattgtttcta 2037873  T
Q  125 attttatgctacttatcggttaggaaatacccgttcattttcattcattactagaaagtaggagatacaacttcttccctattcatatgaccatgacaca 224  Q
     |||||||||| |||   ||||||||  || || |||| || ||| ||||||||||||||  |||||||||||||||| | ||||||||| |||||||||    
T  2037874 gttttatgctagttactagttaggaagcacacgatcatgtttatttattactagaaagtataagatacaacttcttccatgttcatatgatcatgacaca 2037973  T
Q  225 ccactttccactccatgatttagttccacatttttaggaagagagttagtg 275  Q
    ||||||||||| ||||||||||||||||||||||||| |||  ||||||||    
T  2037974 ccactttccaccccatgatttagttccacatttttagcaaggaagttagtg 2038024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 29464153 - 29464233
Alignment:
Q  15 tgttatattattttagcaaactacatgaatatttactttattatattagggtgggtaaaatgggtgacatttattaagtta 95  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||    
T  29464153 tgttatattattttagcaaactatatgaatatttactttattatattagggtaggaaaaataggtgacatttagtaagtta 29464233  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 34519059 - 34518825
Alignment:
Q  17 ttatattattttagcaaactacatgaatatttactttattatattagggtgggtaaaatgggtgacatttattaagttactgatgtagttttattataat 116  Q
    |||| |||||||||||||||  |||||||| || |||||||||||||  | || ||||| ||||||||||||||||||||| |  |||||||||||||||    
T  34519059 ttatcttattttagcaaactttatgaatatatagtttattatattagattaggaaaaattggtgacatttattaagttactaacttagttttattataat 34518960  T
Q  117 tgtttctaattttatgctacttatcggttaggaaatacccgttcattttcattcattactagaaagtaggagatacaacttcttccctattcatatgacc 216  Q
    ||||||| | |||||| || |||   ||||||||  || || |||| || ||||||||||||||||||||||||||||||         |||||||||||    
T  34518959 tgtttct-agtttatgttagttactagttaggaagcacacgatcatatttattcattactagaaagtaggagatacaact---------ttcatatgacc 34518870  T
Q  217 atgacacaccactttccactccatgatttagttccacatttttag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34518869 atgacacaccactttccactccatgatttagttccacatttttag 34518825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 21508389 - 21508436
Alignment:
Q  168 ttcattactagaaagtaggagatacaacttcttccctattcatatgac 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  21508389 ttcattactaaaaagtaggagatacaacttcttccctattcatatgac 21508436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 21508265 - 21508333
Alignment:
Q  17 ttatattattttagcaaactacatgaatatttactttattatattagggtgggtaaaatgggtgacattt 86  Q
    |||| |||||||||||||||| |||||||||| |||| ||||||||| ||  | ||||||||||||||||    
T  21508265 ttatcttattttagcaaactatatgaatatttcctttgttatattagagt-agaaaaatgggtgacattt 21508333  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 28382724 - 28382810
Alignment:
Q  179 aaagtaggagatacaacttcttccctattcatatgaccatgacacaccactttccactccatgatttagttccacatttttaggaag 265  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  28382724 aaagtaggagatacaacttcttccctgttcatatgaccgtgacacaccactttccactccatgatttagttccactattttaggaag 28382810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 28387055 - 28387164
Alignment:
Q  156 cgttcattttcattcattactagaaagtaggagatacaacttcttccctattcatatgaccatgacacaccactttccactccatgatttagttccacat 255  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||       
T  28387055 cgttcatgttcattccatactagaaagtagtagatacaacttcttccttattcatatgaccgtgacacatcactttccactccatgatttagttccatta 28387154  T
Q  256 ttttaggaag 265  Q
    ||||||||||    
T  28387155 ttttaggaag 28387164  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 20523 - 20560
Alignment:
Q  102 tagttttattataattgtttctaattttatgctactta 139  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  20523 tagttttattataattgtttctagttttatgttactta 20560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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