View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7092_low_4 (Length: 443)
Name: NF7092_low_4
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 264 - 417
Target Start/End: Original strand, 45399363 - 45399516
Alignment:
| Q |
264 |
aaatgttgcgaccttatgggtcagtttaggcagtgttgtaatacgacgacccaatttcgaacatagagcgaagaccgataattattccatacggccgtgt |
363 |
Q |
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| T |
45399363 |
aaatgttgtgaccttatgggtcagtttaggcagtgatgtaatacgacgacccaatttcgaacatagagcgaaggccgataattattccatacggccgtgt |
45399462 |
T |
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| Q |
364 |
taatgctcatgcatactactcactgccataaatgtaaccattgaaaaaatatga |
417 |
Q |
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| T |
45399463 |
taatgctcatgcatactactcaccgccataaatgtaaccattgaaaaaatatga |
45399516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 45399240 - 45399367
Alignment:
| Q |
50 |
aacactaaacaaggagcaaaatagagaaggcatcaaaggaccagtgaaacaca--gatgttagatctcaaaccatgagagtaggaggcatgggcgtgcct |
147 |
Q |
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| T |
45399240 |
aacactaaacaaggagcaaaatagagaaggcataaaaggactagtgaaacacatagatgttagatctcaaaccatgagagtaggaggcatgggcgtgcct |
45399339 |
T |
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| Q |
148 |
aaacccatattagtagtgttcacaaatg |
175 |
Q |
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| T |
45399340 |
aaacgcatattagtagtgttcacaaatg |
45399367 |
T |
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