View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7092_low_5 (Length: 443)
Name: NF7092_low_5
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 41592644 - 41592214
Alignment:
| Q |
16 |
aatcccaaccaaccaactaatactaataaactaactaatagattgaactattaaagaagtgaccaaactcaatactttgattgcattgaacagcaactaa |
115 |
Q |
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| T |
41592644 |
aatcccaaccaaccaactaatactaataaactaactaatagattgaactattaaagaagtgaccaaactcaatactttgactgcattgaacagcaactaa |
41592545 |
T |
|
| Q |
116 |
accataatgtaaagcataaacatcacaatcaaattgtgcagggtaatcagattgcattttaaaaatgcagaacaaaagctttcggtgtttaaattatctt |
215 |
Q |
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| T |
41592544 |
accataatgtaaagcataaacatcacaatcaaattgtgcagggtaatcagattgcattttaaaaatgcagaacaaaagctttcggtgtttaaattatctt |
41592445 |
T |
|
| Q |
216 |
gtaaagtgactgcagaagtaaaaccatatgcatcctcttagattgtgatatctttgtcaattataaagatt---------------------aaatttga |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41592444 |
gtaaagtgactgcagaagtaaaaccatatgcatcctcttagattgtgatatctttgtcaattataaagattgaatgaaatgaaaaataagaaaaatttga |
41592345 |
T |
|
| Q |
295 |
ttaattgttagatttaattttcaaaagatatgagagcagagaaaacacagatcagatatagagaaatgaatatttgccatggtcaccaacagagccatgt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
41592344 |
ttaattgttagatttaattttcaaaagatatgagagcagagaaaacacagatcagatacagagaaatgaatatctgccatggtcaccaacagagccatgt |
41592245 |
T |
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| Q |
395 |
tcacacctgatgtgtcaccacgctgcacaca |
425 |
Q |
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| T |
41592244 |
tcacacctgatgtgtcaccacgctgcacaca |
41592214 |
T |
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