View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7092_low_7 (Length: 424)
Name: NF7092_low_7
Description: NF7092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7092_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 409
Target Start/End: Original strand, 33341576 - 33341972
Alignment:
| Q |
13 |
aatatgattatccgacaaggtatcatacactagacaaaaacaaatagattagtaaattaataattaagcataagcaaggagaagaagaaacatatactaa |
112 |
Q |
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| T |
33341576 |
aatatgattatccgacaaggtatcatacactagacaaaaacaaatagattagtaaattaataattaagcataagcaaggagaagaagaaacatatactaa |
33341675 |
T |
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| Q |
113 |
gtggttggtttaaagaaattatcttttcataatgtacacattattactatannnnnnn-ctaacactggatccaaccatgcaagaaccatttgttnnnnn |
211 |
Q |
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| T |
33341676 |
gtggttggtttaaagaaattatcttttcataatgtacacattattacaatattttttttctaacactggatccaaccatgcaagaaccatttgttaaaaa |
33341775 |
T |
|
| Q |
212 |
nnnnnnnnnnngtactaaacagaaccagtttaacaaacatcaacaatagtaacaaatgaacatgttagatcttagaaggaaagaaaaaagtggattttga |
311 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33341776 |
aacaaaaaaa-gtaccaaacagaacctgtttaacaaacatcaacaatagtaacaaatgaacatgttagatcttagaaggaaagaaaaaagtggattttga |
33341874 |
T |
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| Q |
312 |
tgcatgaaaatgtaaagggtggttgagaaagactcacatttagagttttggatctggaaatgaagtaataataataatggaagtgactgtgttgttga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33341875 |
tgcatgaaaatgtaaagggtggttgagaaagactcacatttagagttttggatctggaaatgaagtaataataataatggaagtgactgtgttgttga |
33341972 |
T |
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