View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7093_high_1 (Length: 547)

Name: NF7093_high_1
Description: NF7093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7093_high_1
NF7093_high_1
[»] chr3 (2 HSPs)
chr3 (22-318)||(49124225-49124521)
chr3 (311-536)||(49123946-49124171)
[»] chr6 (4 HSPs)
chr6 (22-129)||(11683284-11683393)
chr6 (22-131)||(18988479-18988586)
chr6 (169-217)||(11683218-11683266)
chr6 (148-217)||(18988416-18988485)
[»] chr8 (2 HSPs)
chr8 (22-131)||(30341175-30341286)
chr8 (149-217)||(30341281-30341349)
[»] chr4 (2 HSPs)
chr4 (370-477)||(4271421-4271528)
chr4 (25-83)||(4271293-4271351)
[»] chr1 (2 HSPs)
chr1 (370-477)||(2807765-2807872)
chr1 (25-83)||(2807637-2807695)
[»] chr5 (2 HSPs)
chr5 (22-131)||(23916938-23917045)
chr5 (148-217)||(23917039-23917108)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 49124521 - 49124225
Alignment:
Q  22 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaatctctcccacttt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124521 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaatctctcccacttt 49124422  T
Q  122 tgtactttcaactaaagaaaatctaaactttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactg 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124421 tgtactttcaactaaagaaaatctaaactttcttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaactg 49124322  T
Q  222 ttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124321 ttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat 49124225  T

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Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 311 - 536
Target Start/End: Complemental strand, 49124171 - 49123946
Alignment:
Q  311 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124171 ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag 49124072  T
Q  411 tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124071 tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca 49123972  T
Q  511 aagtattttattcaccaaagtttctt 536  Q
    ||||||||||||||||||||||||||    
T  49123971 aagtattttattcaccaaagtttctt 49123946  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 11683393 - 11683284
Alignment:
Q  22 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaatc--tctcccact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  11683393 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaatctctctcccact 11683294  T
Q  120 tttgtacttt 129  Q
    ||||||||||    
T  11683293 tttgtacttt 11683284  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 18988586 - 18988479
Alignment:
Q  22 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaa--tctctcccact 119  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||    ||||||||||| ||||||||||||||||||  |||||| ||||    
T  18988586 aggattgacttggcatatgagaattaagatttctcttgacacaacaaggtgaa----cttaagagaatttctcttcaacatctcaaacctctctcgcact 18988491  T
Q  120 tttgtactttca 131  Q
    ||||||||||||    
T  18988490 tttgtactttca 18988479  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
Q  169 ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 217  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  11683266 ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca 11683218  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 18988485 - 18988416
Alignment:
Q  148 actttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 217  Q
    |||||| || |||||||||| |||| ||||||| ||||| |||||||||| | |||| ||||||||||||    
T  18988485 actttcatgcaatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca 18988416  T

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Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 30341175 - 30341286
Alignment:
Q  22 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaa--tctctcccact 119  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  30341175 aggattgacttggcatatgagaattaagatttctcttgacacaacaaggtgaacttccttaagagaatctctcttcaacatctcaaacctctctcccact 30341274  T
Q  120 tttgtactttca 131  Q
    ||||| ||||||    
T  30341275 tttgtgctttca 30341286  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 30341281 - 30341349
Alignment:
Q  149 ctttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 217  Q
    ||||| || |||||||||| |||| ||||||| ||||| |||||||||| |||||| ||||||||||||    
T  30341281 ctttcatgcaatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca 30341349  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 477
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
Q  370 cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag 469  Q
    |||||| ||| ||||||| |||||||| || ||||||  |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4271421 cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag 4271520  T
Q  470 gtaaaaaa 477  Q
    ||||||||    
T  4271521 gtaaaaaa 4271528  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 4271293 - 4271351
Alignment:
Q  25 attgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaa 83  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||    
T  4271293 attgacttggcatatgaggatgaagattgctcttgacacagctaggtgaccttctttaa 4271351  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 370 - 477
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
Q  370 cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag 469  Q
    |||||| ||| ||||||| |||||||| || ||||||  |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  2807765 cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag 2807864  T
Q  470 gtaaaaaa 477  Q
    ||||||||    
T  2807865 gtaaaaaa 2807872  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 2807637 - 2807695
Alignment:
Q  25 attgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaa 83  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||    
T  2807637 attgacttggcatatgaggatgaagattgctcttgacacagctaggtgaccttctttaa 2807695  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 23916938 - 23917045
Alignment:
Q  22 aggattgacttggcatatgagaatgaagattgctcttgacacagcaaggtgaacttccttaagagaatctctcttcaacatctcaaa--tctctcccact 119  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||    ||||||||||| ||||||||||||||||||  |||||| ||||    
T  23916938 aggattgacttggcatatgagaattaagatttctcttgacacaacaaggtgaa----cttaagagaatttctcttcaacatctcaaacctctctcgcact 23917033  T
Q  120 tttgtactttca 131  Q
    ||||||||||||    
T  23917034 tttgtactttca 23917045  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 23917039 - 23917108
Alignment:
Q  148 actttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca 217  Q
    |||||| || |||||||||| |||| ||||||| ||||| |||||||||| | |||| ||||||||||||    
T  23917039 actttcatgcaatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca 23917108  T

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