View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7093_high_2 (Length: 444)
Name: NF7093_high_2
Description: NF7093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7093_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 2340523 - 2340938
Alignment:
| Q |
18 |
gaaagtccatctggtggcacagtagcttggcattatggaaacatagatgaaagtgatttcaaaggcgcagaagagtatttccctacattatcgaatactg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2340523 |
gaaagtccatctggtggcacagtagcttggcattatggaaacatagatgaaagtgatttcaaaggcgcagaagagtatctccctacattatcgaatactg |
2340622 |
T |
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| Q |
118 |
taagattcatcgcatacannnnnnngtgtt-tatgtaattgagtatttacatctgaagttagttgaacacaaaagtttgagctgtcatttacctttttcc |
216 |
Q |
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|||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2340623 |
taagattcatggcatacatttttttgtgttatatgtaattgagtatttacatctgaagttagttgaacacaaaagtttgagctgtcatttacctttttcc |
2340722 |
T |
|
| Q |
217 |
atgtggtcctctgttaagttatccaaacattaatttgctatctatatttctcatagcatttattcttgacattgtggctttgacacctcgagaaatcctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2340723 |
atgtggtcctctgttaagttatccaaacattaatttgctatctatatttctcatagcatttattcttgacattgtggctttgacacctcgagaaatcctt |
2340822 |
T |
|
| Q |
317 |
tgccattttatctcattgtgaccatcagtttcatttctccatctacattttggccataatatttactttcacttcgtcagcatccatttcttgttaaaag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2340823 |
tgccattttatctcattgtgaccatcagtttcatttctccatctacattttggccataatatttactttcacttcgtcagcatccatttcttgttaaaag |
2340922 |
T |
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| Q |
417 |
gcatagtttattccca |
432 |
Q |
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| T |
2340923 |
gcatagtttattccca |
2340938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 47 - 270
Target Start/End: Original strand, 2343278 - 2343502
Alignment:
| Q |
47 |
gcattatggaaacatagatgaaagtgatttcaaaggcgcagaagagtatttccctacattatcgaatactgtaagattcatcgcatacannnnnnngtgt |
146 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
2343278 |
gcattatggaaatatagatgaaagtgatttcacaggcgcacaagagtatatccctacattatcgaatactgtaagattcatagcatacatttttt-gtgt |
2343376 |
T |
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| Q |
147 |
t-tatgta-attgagtatttacatctgaagttagttgaacacaaaagtttgagctgtcatttacctttttccatgtggtcctctgttaagttatccaaac |
244 |
Q |
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| T |
2343377 |
tatatgtatattgagtatttgcatctgaattgagttgaacgcaaaagtttgagctgtcatttacctttttccatgtggtcctctgttaagttatccacac |
2343476 |
T |
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| Q |
245 |
attaatttgctatctatatttctcat |
270 |
Q |
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| T |
2343477 |
attaatttgctatctatatttctcat |
2343502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 334
Target Start/End: Original strand, 7750856 - 7751037
Alignment:
| Q |
154 |
attgagtatttacatctgaagttagttgaacacaaaagtttgagctgtcatttacctttttccatgtggtcctctgttaagttatccaaacattaatttg |
253 |
Q |
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|||||| ||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||| |||| |||||||| || |||| ||||||||| |
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| T |
7750856 |
attgagcatttacatctgaagtcagttgaatgcaaatgtttgagctgtcacttacctttttccatggggtc--ctgttaagcgattcaaatattaatttg |
7750953 |
T |
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| Q |
254 |
ctatctatatttctcatagcatttattcttgacattgtggctttgacacc---tcgagaaatcctttgccattttatctcattg |
334 |
Q |
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|||||| ||||| ||||| | ||| ||||| || | |||||||||||| | || ||||| ||||||||||||||||||| |
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| T |
7750954 |
ctatctgtatttatcataacttttcttctttaccatacggctttgacacccttttaaggaatcccttgccattttatctcattg |
7751037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 7750541 - 7750644
Alignment:
| Q |
24 |
ccatctggtggcacagtagcttggcattatggaaacatagatgaaagtgatttcaaaggcgcagaagagtatttccctacattatcgaatactgtaagat |
123 |
Q |
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||||||| |||||| || |||| ||||||||| |||||||||| |||||||||| ||| |||||||| || ||||||||||| | ||||||||||| | |
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| T |
7750541 |
ccatctgatggcaccgtggctttgcattatggggacatagatgagagtgatttcataggggcagaagatcatctccctacattacccaatactgtaagtt |
7750640 |
T |
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| Q |
124 |
tcat |
127 |
Q |
| |
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|||| |
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|
| T |
7750641 |
tcat |
7750644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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