View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7093_high_5 (Length: 380)
Name: NF7093_high_5
Description: NF7093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7093_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 40762958 - 40762806
Alignment:
| Q |
16 |
atagttatccatgtttaannnnnnnggtatataaatttatactctcaatgatcttcttaagaaggagtgtgcataatcttaaacgacatgggattgtgac |
115 |
Q |
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| T |
40762958 |
atagttatccatgtttaatttttttggtatataaatttatactctcaatgatcttcttaagaaggagcttgcataatcttaaacgacatgggattgtgac |
40762859 |
T |
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| Q |
116 |
aatataagtacttttctaggccaacatattcaactcacctaaacttttacttg |
168 |
Q |
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| T |
40762858 |
aatataagtacttttctaggccaacatattcaactcacctaaacttttacttg |
40762806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 226 - 345
Target Start/End: Complemental strand, 40762748 - 40762629
Alignment:
| Q |
226 |
tttcattgcagatgagtaactatcaatcaatcgaaggagttttatactgcaagactcacgctgagcagcttttcaaggattccttcgccgccaagaaacc |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40762748 |
tttcattgcagatgagtaactatcaatcaatcgaaggagttttatactgcaagactcacgctgagcagcttttcaaggattccttcgccgccaagaaacc |
40762649 |
T |
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| Q |
326 |
ccagacgggtaataagatcc |
345 |
Q |
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| T |
40762648 |
ccagacgggtaataagatcc |
40762629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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